Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   33   0.25 
SB_50923| Best HMM Match : Sec6 (HMM E-Value=0.0068)                   32   0.33 
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   2.3  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)                 29   4.1  

>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 57   EQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECLSTSKAKSS 115
            E ++ +LS +P E+  T    L NT ++ +G + N      +D  K+ E L  + +  S
Sbjct: 1320 EVVFSALSENPTEVTGTRSDELANTASKVIGSLPNPTPEILQDAAKIVESLDPTASAGS 1378


>SB_50923| Best HMM Match : Sec6 (HMM E-Value=0.0068)
          Length = 312

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 47  LGSRQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKEC 106
           LG  Q    V+   + +S   ++++       R++      E++NH+ N PE++EK    
Sbjct: 66  LGQLQGMEEVDGNLKGVSKLAEDLEQVKQVQYRHSQLSKCNELLNHIFNVPENVEKAYIL 125

Query: 107 LSTSK 111
           +S  K
Sbjct: 126 ISDGK 130


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 50  RQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECLST 109
           R+K++++    ++L+ +  E+      S+RN     VG     +   P  +E VKE +  
Sbjct: 147 REKKKQIHNSGENLAKTQIEVPKEVKESIRNARKTLVGSWQRDISRTPSPVESVKEDMEL 206

Query: 110 SKAK 113
           ++++
Sbjct: 207 TESQ 210


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 56  VEQIYQSLSSSPDEIKAT-TIASLRNTGNEDV---GEIMNHLLNHPEDLEKVKECL 107
           VE I +  SS+PD+   T  +A  R + N  V   GE  NH +   +++ K + CL
Sbjct: 698 VELIKEESSSTPDQKNDTCEVAHTRTSNNTSVCIIGEQRNHPVEKSKEIVKNESCL 753


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 50  RQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECLST 109
           R +R R E+     S SP E    +  S+RN  +E+   I+   +    D E+ K+   +
Sbjct: 434 RDRRDRKEKTRDRTSRSPSESPKRSSRSIRNIASEEEYVILAQ-MQRVSDTEQEKKARDS 492

Query: 110 SKAKSSTY 117
           S    S Y
Sbjct: 493 SHDSGSEY 500


>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
          Length = 520

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 168 KEDIIITEEGAAIKMQALL-NLTVSRLLDVITLDLDSARELLLISKWGFDGASSQSN 223
           ++ +I T + A ++++ +  NLT+S++LD   +D +S+ +   I +   + + SQ N
Sbjct: 94  RDHLIKTMKSAQLRLKTIRKNLTLSQILDEAAIDEESSAQAAAIERKLKEDSESQRN 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,388,555
Number of Sequences: 59808
Number of extensions: 206131
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 6
length of query: 224
length of database: 16,821,457
effective HSP length: 80
effective length of query: 144
effective length of database: 12,036,817
effective search space: 1733301648
effective search space used: 1733301648
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)