Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 82  GNEDVGEIMNHLLNHPEDL 100
           GN+++GE MN  +N   +L
Sbjct: 198 GNKELGEQMNRFINENSEL 216


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/42 (23%), Positives = 24/42 (57%)

Query: 42  KPFEELGSRQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGN 83
           +P E+L   +      + +QSL+++  E++AT + ++ +  N
Sbjct: 473 QPQEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILSMDN 514


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 83  NEDVGEIMNHLLNHPEDLEKVKECLST 109
           N D   +     + PEDL+ ++E L+T
Sbjct: 267 NTDARHLFRTASSTPEDLQDLEEPLTT 293


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,513
Number of Sequences: 429
Number of extensions: 1897
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 224
length of database: 140,377
effective HSP length: 55
effective length of query: 169
effective length of database: 116,782
effective search space: 19736158
effective search space used: 19736158
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)