GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    28   0.97 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   2.9  
SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit Apc1...    26   3.9  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   5.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.8  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   9.0  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   9.0  

>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 134 WQYINLREAASENGSDLYPSYYKIKQEKTKCYPGKEDIIITEEGAAIKMQALL 186
           WQ  NL  +    G +  P YY       K YP  E ++   +G + K  +LL
Sbjct: 31  WQLKNLI-STQNTGEESNPIYYTNSVFVWKIYPNSEKVVQVGQGLSFKPLSLL 82


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 46  ELGSRQKRRRVEQIY-QSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVK 104
           E+  R  RR+  Q+  QS ++ P   ++      +     D G+I + + N  EDL K  
Sbjct: 493 EIAYRIPRRKPGQVAPQSTNAEPSNNQSNPPLRDQEPQRGDKGDIKSAINNSTEDLSKKH 552

Query: 105 ECLSTSKAKSS 115
             L +S+   S
Sbjct: 553 PALHSSRPSDS 563


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 88  EIMNHLLN--HPEDLEKVKECLSTSKA 112
           +I N ++N  HP DL  + EC + +KA
Sbjct: 236 QICNDIMNTFHPNDLSTINECRNLAKA 262


>SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit
           Apc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 57  EQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKE 105
           E+  Q  +     I  + IAS R++  E    IM HL  H + L+++ E
Sbjct: 58  EEAEQERNERASRIAISRIASSRSSIPEYRQAIMQHLTKHVQQLDQLAE 106


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 42  KPFEELGSR-QKRRRVEQIYQSLSSSPDEIKATT-----IASLRNTGNEDVGEIMNHL 93
           K  E + S   K+ R   + +SL+ S +E+         ++ L    N D+GE+ NHL
Sbjct: 691 KTIENVSSNFSKKNRNVVVSESLTKSMEEVLTPEKFYERLSKLLEEENSDLGELKNHL 748


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 68  DEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECL 107
           D+I    IA + N G+ED+G I N  +    + EK K+ L
Sbjct: 462 DDIDIDDIAQVDN-GSEDLGSIENKTVEDTGNREKSKKSL 500


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 44 FEELGSRQKRRRVEQIYQSLSSSPD---EIKATTIASLRNTGNEDV 86
          FE LG+ +++  VE+I Q  + +P+      A+T    R  GN  V
Sbjct: 23 FERLGAEREKEAVERIVQEENQNPEVPSNDDASTDIKSRKEGNMKV 68


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 77  SLRNTGNEDVGEIMNHLLNHPEDLE 101
           +L  TGN D    MN L  H ED E
Sbjct: 598 ALLATGNSDTETAMNWLFEHMEDPE 622


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 61  QSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNH 96
           Q LSSS   IK     SLR      +GE  N L+ H
Sbjct: 206 QQLSSSTKPIKVPKPVSLRKALTIRLGEYGNALIEH 241


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,939
Number of Sequences: 5004
Number of extensions: 31711
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 9
length of query: 224
length of database: 2,362,478
effective HSP length: 70
effective length of query: 154
effective length of database: 2,012,198
effective search space: 309878492
effective search space used: 309878492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)