GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356     33   0.19 
04_03_0371 - 15050825-15051124                                         32   0.33 
04_03_0321 + 14335813-14336112                                         32   0.33 
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524...    30   1.7  
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107...    29   2.3  

>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
          Length = 444

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 57  EQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECLSTSKAKSST 116
           E ++ +  SSP+   A  + S+ N+ N + GE+ ++ + +PE    +   +S S A S T
Sbjct: 187 ESVHLTTPSSPEVPYAKLLTSINNSKNAETGELQSYQI-YPE--SPIGRLISPSSACSGT 243

Query: 117 YSP 119
            SP
Sbjct: 244 CSP 246


>04_03_0371 - 15050825-15051124
          Length = 99

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 134 WQYINLREAASENGSDLYPSYYKIKQEKTKCY 165
           W+ + ++E   E+GSD   S  K+ ++K KCY
Sbjct: 36  WENLYIKEKKGEDGSDSNSSERKVDRKKVKCY 67


>04_03_0321 + 14335813-14336112
          Length = 99

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 134 WQYINLREAASENGSDLYPSYYKIKQEKTKCY 165
           W+ + ++E   E+GSD   S  K+ ++K KCY
Sbjct: 36  WENLYIKEKKGEDGSDSNSSERKVDRKKVKCY 67


>04_04_1650 -
           35051728-35051823,35052054-35052162,35052270-35052416,
           35052516-35052637,35052726-35052825,35052895-35053095,
           35053202-35053407,35053778-35053803,35054239-35054327,
           35054427-35054635,35055577-35055672,35055754-35055924
          Length = 523

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 55  RVEQIYQSLSSSPDEIKATTIA-SLRNTGNEDVGEIMNHLLNH 96
           +V+ I++  + S ++  A T+  SL  T  + +G+ M ++LNH
Sbjct: 197 QVDAIFEGNACSENQKSALTLTKSLAQTAKKTIGDFMEYILNH 239


>09_04_0537 +
           18410201-18410207,18410301-18410586,18410674-18410773,
           18410881-18411147,18411286-18411363,18411444-18411545,
           18411628-18411677,18411793-18411889,18412248-18412361,
           18412495-18412666,18412865-18413217,18413812-18413898,
           18413981-18414001
          Length = 577

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 84  EDVGEIMNHLLNHPEDLEKVKECL 107
           E +  + NHL++ P D+ K KECL
Sbjct: 499 EKLESLCNHLMSKPPDMPKEKECL 522


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,444,805
Number of Sequences: 37544
Number of extensions: 180133
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 5
length of query: 224
length of database: 14,793,348
effective HSP length: 79
effective length of query: 145
effective length of database: 11,827,372
effective search space: 1714968940
effective search space used: 1714968940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)