GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.0  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.2  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   7.3  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 41  RKPFEE-LGSRQKRRRVEQIYQSLSSSPDEIKATTIASLRN 80
           +KP +E L + ++ R V+ IY  L  SP EI+   + +  N
Sbjct: 587 KKPLKERLRNIEEPRNVKLIYDVLKFSPPEIEPAVLFATNN 627


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 141 EAASENGSDLYPSYYKIKQEKTKCYPG 167
           E     G+   PSY ++  ++T+ +PG
Sbjct: 12  EKEDSEGTGTSPSYRRLPNDETRVHPG 38


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 71  KATTIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECLS 108
           K  T+A+ RNT  + +G+    L N  + +   ++ L+
Sbjct: 309 KEATVAAERNTMKDSIGQEQRKLKNLQKSIRDDEQALA 346


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,837
Number of Sequences: 2123
Number of extensions: 5846
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 224
length of database: 516,269
effective HSP length: 62
effective length of query: 162
effective length of database: 384,643
effective search space: 62312166
effective search space used: 62312166
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)