GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z46242-9|CAA86334.2|  491|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
           protein B0024.6 protein.
          Length = 1161

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 43  PFEELGSRQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHL 93
           PF+ + +  K+ + E   +S+SS P     +TI+S R++   +VGE  N+L
Sbjct: 582 PFKSMMTVTKKGKGEHSMRSISSVP-----STISSTRSSTLSEVGETRNYL 627


>Z46242-9|CAA86334.2|  491|Caenorhabditis elegans Hypothetical
           protein F35G12.12 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 84  EDVGEIMNHLLNHPEDLEKVKECLSTSKAKSST 116
           E+VG +M HL++H    E++K  LS +  + S+
Sbjct: 136 EEVGRLMAHLVDHDLINEELKSQLSVANGRESS 168


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 74  TIASLRNTGNEDVGEIMNHLLNHPEDLEKVKECLSTSKAKSSTYSPDXXXXXXXXXXXXX 133
           TIA+  N   E+V  +M+H++   + LE   +   T    S +++               
Sbjct: 30  TIATATNDRIEEV--LMSHIIEQNKTLENGSKPNKTLMVGSPSWTNKLQKLPSKCKKVP- 86

Query: 134 WQYINLREAASENGSDLYPSYYKIKQEKTKCYP-GKEDIIITEEGAAIKMQALLNLTVSR 192
            +   + E  SEN  +   S+YK+K+ KTK     +EDI++   G    +Q  L +T  R
Sbjct: 87  -EVSEVPEECSENSQNDALSFYKLKR-KTKSQDFVEEDIVLANYGLLETIQE-LKVTWER 143

Query: 193 LL 194
           ++
Sbjct: 144 II 145


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,759,291
Number of Sequences: 27539
Number of extensions: 163487
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 3
length of query: 224
length of database: 12,573,161
effective HSP length: 79
effective length of query: 145
effective length of database: 10,397,580
effective search space: 1507649100
effective search space used: 1507649100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)