GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000076-TA|BGIBMGA000076-PA|undefined
         (682 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       26   0.98 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.98 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.98 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   6.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   6.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   6.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   6.9  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 25.8 bits (54), Expect = 0.98
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 449 NSDVKLGRSYVANFQVNQQADKKRREQDKRK 479
           N  +KL +   A  ++N+QA ++R EQ++ K
Sbjct: 56  NRRMKLKKELRAVKEINEQARREREEQERHK 86


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 25.8 bits (54), Expect = 0.98
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 449 NSDVKLGRSYVANFQVNQQADKKRREQDKRK 479
           N  +KL +   A  ++N+QA ++R EQ++ K
Sbjct: 207 NRRMKLKKELRAVKEINEQARREREEQERHK 237


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 0.98
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 449 NSDVKLGRSYVANFQVNQQADKKRREQDKRK 479
           N  +KL +   A  ++N+QA ++R EQ++ K
Sbjct: 266 NRRMKLKKELRAVKEINEQARREREEQERHK 296


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 24 YRLRKKDNSGDSSPLRSPGHYVITGSTKIPETTQILLNNASRSLETDRKKYDSNMNSPSS 83
          Y + ++  + +S PL       +     + E  QIL  NA  +LE +    D N+    S
Sbjct: 15 YNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWN----DYNLKWNES 70

Query: 84 DRGG 87
          + GG
Sbjct: 71 EYGG 74


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 24 YRLRKKDNSGDSSPLRSPGHYVITGSTKIPETTQILLNNASRSLETDRKKYDSNMNSPSS 83
          Y + ++  + +S PL       +     + E  QIL  NA  +LE +    D N+    S
Sbjct: 15 YNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWN----DYNLKWNES 70

Query: 84 DRGG 87
          + GG
Sbjct: 71 EYGG 74


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 24 YRLRKKDNSGDSSPLRSPGHYVITGSTKIPETTQILLNNASRSLETDRKKYDSNMNSPSS 83
          Y + ++  + +S PL       +     + E  QIL  NA  +LE +    D N+    S
Sbjct: 15 YNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWN----DYNLKWNES 70

Query: 84 DRGG 87
          + GG
Sbjct: 71 EYGG 74


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 143 INVPEENSQRIDQIRCQGNAKVRPDITSTIRRSSS 177
           IN+ EE++Q+ +  R  G +  RP    T  R+ S
Sbjct: 239 INLLEEDNQKPNVCRICGKSYARPSTLKTHLRTHS 273


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.126    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,718
Number of Sequences: 317
Number of extensions: 5645
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 682
length of database: 114,650
effective HSP length: 61
effective length of query: 621
effective length of database: 95,313
effective search space: 59189373
effective search space used: 59189373
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)