Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000075-TA|BGIBMGA000075-PA|undefined
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 40 0.006
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 36 0.12
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142... 33 0.50
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 33 0.87
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 6.1
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 8.1
02_04_0109 + 19812544-19814474,19814574-19814607 29 8.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 8.1
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 39.9 bits (89), Expect = 0.006
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 61 IDFGESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRKTQGYNS 120
+D GE N QL + + + +R + SA+ R Q+PP K +K + Y+S
Sbjct: 128 VDCGEVSDSQN----QLKGEKEKKLRRTEDNSAAEKRVK--TQKPPTHDKQKKKRKHYSS 181
Query: 121 EGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRH--IKSPVNDAHTKHASKS 174
+ Y SSD D+ S S S + + T+S +RH KS D H KS
Sbjct: 182 DSY-SSDYSDTQSSDSGSESESYSSSSLDTSSSSDHRHKRRKSSKKDKHRSAKGKS 236
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 35.5 bits (78), Expect = 0.12
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 46 KSESSTPKIHPMAFTIDFGESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRP 105
+S SS + F FG SKPV ++R+ + +KS Q SMS + P+A+
Sbjct: 111 RSSSSHDRKPQSTFGSFFGPSKPVISQRVIE-ERKSLKELQNTASMSRD---RRPSAKEI 166
Query: 106 PMSAKLPRKTQGYN 119
P S+K+ KT G++
Sbjct: 167 PSSSKVQSKTNGHH 180
Score = 31.5 bits (68), Expect = 2.0
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 76 QLAKKSQARHQRVQSMSASLTRQ-----SPTAQRPPMSAKLPRKTQGY---NSEGYFSSD 127
QL KSQ Q +Q L+ Q S QRPP + P+ +QG + +G S+
Sbjct: 396 QLMSKSQRPQQSLQRQRPQLSSQNERLESSERQRPPSQSYRPQSSQGQRPSSVQGRQYSE 455
Query: 128 QEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKS-PVNDAHTK 169
Q + +K + P + P+ +R I S + DAH K
Sbjct: 456 QRRIQANDRVKSAERQIRPP---SKPMPSRQIPSNGMRDAHAK 495
>04_04_1548 -
34313212-34313304,34313518-34313632,34314097-34314287,
34314391-34315379,34315989-34316136,34316349-34316424,
34316946-34317110,34317196-34317286,34318069-34318153,
34318256-34318411,34318479-34318586,34318713-34318811,
34318927-34319036,34319139-34319208
Length = 831
Score = 33.5 bits (73), Expect = 0.50
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 54 IHPMAFTIDFGESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLP- 112
I+P A I S ++L+QL + Q ++ + Q + + Q PT+ P LP
Sbjct: 471 INPDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVLPSPTSLPS 530
Query: 113 --RKTQGY-----NSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITN 156
R+ G+ NS + +S D+ L S +S A + + N P+ +
Sbjct: 531 HLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVAS 581
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 32.7 bits (71), Expect = 0.87
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 1/147 (0%)
Query: 312 TEEQKARMSIDRNFDTKLIKDEEIFKQRSRDPELILDFTQRVITKEPRRDTYLRSPVEAN 371
TEE+K ++ ++ F+ K+I+ +++ +QR+ E + Q V + + +R VE
Sbjct: 721 TEEKKKLLAREKAFERKIIEYQDVARQRAESEERKIIEYQDVARQRAESEDKMREQVEVL 780
Query: 372 KGFNVPKVSKDKNVLEISCCYESPTENDLATQTSKQIKSTRSYLEKIKNRVRTITEKTFA 431
+ N KN E E +EN K ++ R L + + ++E+
Sbjct: 781 EKKNEELELACKNQSEKISALELESEN-CRQLLLKSCETVRIALRSLGADISLLSEENTL 839
Query: 432 KSPPIHGEEPDFGSFTSVTTSGVLSSK 458
+ EE G SVT SK
Sbjct: 840 AAVGKWFEEFSTGLKDSVTPFASRCSK 866
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 6.1
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 79 KKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIK 138
K +AR QR +++S SP + PP A++ K N+E SSDQ + +
Sbjct: 829 KAEKARVQRYGGVNSSGIVPSPRSALPPKLAQIKEKAPTANAE---SSDQPSDNQNNPLV 885
Query: 139 IRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSP 175
+ N +P R +P A+T A P
Sbjct: 886 VTQLKLAN-IEKRAPRVPRPPPAPSATANTASALSPP 921
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.5 bits (63), Expect = 8.1
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 79 KKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIK 138
K +AR QR +++S SP + PP A++ K N+E SSDQ + +
Sbjct: 524 KAEKARVQRYGGVNSSGIVPSPRSALPPKLAQIKEKAPTANAE---SSDQPSDNQNNPLV 580
Query: 139 IRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSP 175
+ N +P R +P A+T A P
Sbjct: 581 VTQLKLAN-IEKRAPRVPRPPPAPSATANTASALPPP 616
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 368 VEANKGFNVPKVSKDKNVLEISCCYESPTENDLATQTSKQIKSTRSYLEKIKN 420
V + N+P +++KN SP E +L ++T+ +K TR Y + IK+
Sbjct: 440 VSGSPQHNLPSTAENKNS---DFLVNSPLEGNLDSKTTTGLKHTRGYQQDIKD 489
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 8.1
Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 10/221 (4%)
Query: 56 PMAFTIDFGESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRKT 115
P + T++ + P + + E L + +Q+ +++L SP+A+ P
Sbjct: 1661 PGSQTVETSQQPPAEAKLTENLGVTAWDVQPEMQTTTSTL--DSPSARMCP-----DNNN 1713
Query: 116 QGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSP 175
Q + +S ++ S + ++ A A + + S H +
Sbjct: 1714 QTVHQPDTSTSPLQEGSTSCHLTSVDATAGVTAKVDDTAAADPLDSETQSYTAAHKPAAL 1773
Query: 176 IVDS-IMSRSDNYSYLSRQALNLPLKSNTYSKEMHRTPSYNNLYQTRPVTHIVDESPEAV 234
+V + + +++D S L RQ++++PL ++ S + P+ T D PE
Sbjct: 1774 LVSTEVETQTDQSSMLERQSISVPLVQSSLSSQ--NPPAEAEPASTLSRETARDVQPERQ 1831
Query: 235 LLTDISSPELDILTPDNGVPTPEHYKSPSTRKGRATSETPD 275
+ L + PD+ T ++ +++G D
Sbjct: 1832 QSASVLETSLQRMHPDDDSQTKHQLETVLSQRGETCGHLGD 1872
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.125 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,848
Number of Sequences: 37544
Number of extensions: 677258
Number of successful extensions: 1473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1466
Number of HSP's gapped (non-prelim): 15
length of query: 603
length of database: 14,793,348
effective HSP length: 86
effective length of query: 517
effective length of database: 11,564,564
effective search space: 5978879588
effective search space used: 5978879588
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 63 (29.5 bits)
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