Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000075-TA|BGIBMGA000075-PA|undefined
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07210.1 68416.m00860 expressed protein predicted using genef... 36 0.058
At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s... 36 0.077
At3g12690.3 68416.m01586 protein kinase, putative similar to vir... 36 0.077
At3g12690.2 68416.m01585 protein kinase, putative similar to vir... 36 0.077
At3g12690.1 68416.m01584 protein kinase, putative similar to vir... 36 0.077
At3g61690.1 68416.m06913 expressed protein 34 0.31
At5g10950.1 68418.m01271 cylicin-related low similarity to SP|Q2... 33 0.41
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 33 0.41
At1g77720.1 68414.m09049 protein kinase family protein contains ... 32 0.95
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 32 0.95
At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1) ... 32 1.3
At4g20980.1 68417.m03037 eukaryotic translation initiation facto... 32 1.3
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,... 31 1.7
At2g38070.1 68415.m04673 expressed protein and genscan 31 2.2
At1g31870.1 68414.m03917 expressed protein 30 3.8
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 30 3.8
At4g14990.1 68417.m02303 expressed protein 30 5.1
At5g03640.1 68418.m00323 protein kinase family protein contains ... 29 6.7
At3g05380.1 68416.m00588 myb family transcription factor contain... 29 6.7
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge... 29 6.7
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 29 6.7
At2g34640.1 68415.m04255 expressed protein 29 6.7
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h... 29 8.9
At5g24260.1 68418.m02854 prolyl oligopeptidase family protein si... 29 8.9
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 29 8.9
At1g56200.1 68414.m06459 expressed protein 29 8.9
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 29 8.9
At1g08300.1 68414.m00916 expressed protein 29 8.9
>At3g07210.1 68416.m00860 expressed protein predicted using
genefinder
Length = 547
Score = 36.3 bits (80), Expect = 0.058
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 156 NRHIKSPVNDAHTKHASKSPIVDSIMSRSDNYSYLSRQALNLPLKSNTYSKEMHRTPSYN 215
N+H + +++ TK K P++ + S + + + K N S ++ S N
Sbjct: 234 NQHWEGSLDEHTTK--PKLPLIRLMSSGQKSERSCTSFTMRRVFKPND-SADVGTPSSSN 290
Query: 216 NLYQTRPVTHIVDESPEAVLLTDISSPELDILTPDNGVPTPEHYKSPSTRKGRATSET 273
QT P + I E + + + T G+PTPE Y+SP G +ET
Sbjct: 291 TRDQTHPSSSIAAEEEKEEETSKTNPQVCGTTTHAQGIPTPEIYESPKLTSGPLRNET 348
>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 357
Score = 35.9 bits (79), Expect = 0.077
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 245 DILTPDNGVPTPEHYKSPSTRKGRATSETPDLFKKCMIKETLYIDDEVDRESNNSSTGTY 304
D + P + PT E KSP K ETP+ K+ L +++ +E+ +
Sbjct: 178 DDIPPTSEEPTTEVEKSPVAEKQGGEDETPE------AKKELTAEEKAQKEAEEAEAREM 231
Query: 305 TIEG-DNYTEEQKARMSI----DRNFDTKLIKD-EEIFKQRSRDPELILDFTQRVITKEP 358
T+E + EE+K + +R DTK+ + +++ +++ D E+ F + KE
Sbjct: 232 TLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEI---FIKLGSDKEK 288
Query: 359 RRD 361
R+D
Sbjct: 289 RKD 291
>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 35.9 bits (79), Expect = 0.077
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 104 RPPMSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNS---PITNRHIK 160
+PP S + P T+G NSEG + S S+ +R + +N + P+T
Sbjct: 58 QPPKSLEPPPSTRGTNSEGDLKHNTYSSD-GDSLAMRKNAPKNLHYDPKKIVPLTTSETY 116
Query: 161 SPVNDAHTKHASKSPIVDSIMSRSDNYSY 189
SP H H +KSP + +Y+Y
Sbjct: 117 SPSARNHHHHRTKSPDKKRAPRHNGDYAY 145
>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 35.9 bits (79), Expect = 0.077
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 104 RPPMSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNS---PITNRHIK 160
+PP S + P T+G NSEG + S S+ +R + +N + P+T
Sbjct: 58 QPPKSLEPPPSTRGTNSEGDLKHNTYSSD-GDSLAMRKNAPKNLHYDPKKIVPLTTSETY 116
Query: 161 SPVNDAHTKHASKSPIVDSIMSRSDNYSY 189
SP H H +KSP + +Y+Y
Sbjct: 117 SPSARNHHHHRTKSPDKKRAPRHNGDYAY 145
>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 35.9 bits (79), Expect = 0.077
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 104 RPPMSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNS---PITNRHIK 160
+PP S + P T+G NSEG + S S+ +R + +N + P+T
Sbjct: 58 QPPKSLEPPPSTRGTNSEGDLKHNTYSSD-GDSLAMRKNAPKNLHYDPKKIVPLTTSETY 116
Query: 161 SPVNDAHTKHASKSPIVDSIMSRSDNYSY 189
SP H H +KSP + +Y+Y
Sbjct: 117 SPSARNHHHHRTKSPDKKRAPRHNGDYAY 145
>At3g61690.1 68416.m06913 expressed protein
Length = 1303
Score = 33.9 bits (74), Expect = 0.31
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 66 SKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRKTQGYNSEGYFS 125
S VD+ R + L ++ + R + S+S+ R +P+ Q P +A + Y E
Sbjct: 529 STRVDSIRKKSLESETLSSGVRYSADSSSV-RHTPSPQSPDSTADMSSAVNSYYDEVGSV 587
Query: 126 SDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSPIVDSIMSRSD 185
S ED ++G + L + N H P N + T H PI SI++ S
Sbjct: 588 SVNEDFSVAGE-QEEQDLVNSMTSVTGQGFNGHFPFPFNFS-TGHL-PFPITPSILA-SM 643
Query: 186 NYSYLSRQAL---NLPLKSNTYSKEMHRTPSYNNLYQTR---PVTHIVDESPEAVLLTDI 239
Y + + NLP +S + ++ + T H + E P D+
Sbjct: 644 GYGQRNMPGIVPSNLPFIEAPWSTNLQFPQNFVSSPFTHYFPSGAHPISEKPSKTGSDDM 703
Query: 240 SSPELDILTPDN 251
S E+++ DN
Sbjct: 704 GSSEVNVDESDN 715
>At5g10950.1 68418.m01271 cylicin-related low similarity to
SP|Q28092 Cylicin II (Multiple-band polypeptide II) {Bos
taurus}
Length = 395
Score = 33.5 bits (73), Expect = 0.41
Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 4/236 (1%)
Query: 226 IVDESPEAVLLTDISSPELDILTPDNGVPTPEHYKSPSTRKGRATSETPDLFKKCMIKET 285
+++E +IS E G P P K ++ KGR T E K+ + +
Sbjct: 88 LIEEDDAESESDEISLQEESAGESSEGTPEPPKGKGKASLKGR-TDEAMPKKKQKIDSSS 146
Query: 286 LYIDDEVDRESNNSSTGTYTIEGDNYTEEQKARMSIDRNFDTKLIKDEEIFKQRSRDPEL 345
EV+++++ T GD + A + F +K D++ + S+ P++
Sbjct: 147 KSKAKEVEKKASKPETEKNGKMGDIGGKIVAAASRMSERFRSKGNVDQKETSKASKKPKM 206
Query: 346 ILDFTQRVITKEPRRDTYLRSPVEANKGFNVPKVSKDKNVLEISCCYESPTEND---LAT 402
T+R T + D ++ + PKV K N S E++ L T
Sbjct: 207 SSKLTKRKHTDDQDEDEEAGDDIDTSSEEAKPKVLKSCNSNADEVAENSSDEDEPKVLKT 266
Query: 403 QTSKQIKSTRSYLEKIKNRVRTITEKTFAKSPPIHGEEPDFGSFTSVTTSGVLSSK 458
SK K + + + S +GE +T S + S K
Sbjct: 267 NNSKADKDEDEEENETSDDEAEPKALKLSNSNSDNGENNSSDDEKEITISKITSKK 322
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 33.5 bits (73), Expect = 0.41
Identities = 70/332 (21%), Positives = 129/332 (38%), Gaps = 44/332 (13%)
Query: 44 DEKSESSTPKIHPMAFTIDFG---ESKPVDNRRLEQLAKKSQAR--HQRVQSMSASLT-R 97
+ S S PKI ++ + G ES+P D+ +Q ++ H ++ + R
Sbjct: 101 NNNSHSYVPKILEVSSVFNVGHESESEPSDDSSGDQRKFQTWKNKYHMKIPEVETRFVDR 160
Query: 98 QSPTAQRPPMSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNS----- 152
S + P+ LP ++ Y+ S D +SG ++ + L + NS
Sbjct: 161 VSSENREKPLL--LPVRSLNYSRVSDSSGD--NSGRWEKVRSKRELLKTLGDDNSDVLPS 216
Query: 153 PITNRHIKSPVNDAHTKHASKSPIVDSIMSRSDN---YSYLSRQALNLPLKSN---TYSK 206
PI R S + + +K P V ++ + + + + P KSN +
Sbjct: 217 PIPWRSRSSSSSSSSSKEVESLPSVKNLTTVESQPLIKNLTPPSSFSSPRKSNPIPNLAS 276
Query: 207 EMHRTPS------------YNNLYQT-RPVTHIVDESPEAVLLTDISSPELDILTPDNGV 253
E H +P YN+ + P + V+ +V T + E P
Sbjct: 277 EFHPSPPPPPPPPPPLPAFYNSSSRKDHPGIYRVERRESSVHKTKFAGGEFHPPPPPPPP 336
Query: 254 PTPEHYKSPSTR-----KGRATSETP---DLFKKCMIKETLYIDDEVDRESNN--SSTGT 303
P E+YKSP T+ + R +SE + KK + + E D E N+ S+ G+
Sbjct: 337 PPVEYYKSPPTKFRLSNERRKSSEQKMKRNAPKKVWWSDPIVESKEQDTEKNDQRSNLGS 396
Query: 304 YTIEGDNYTEEQKARMSIDRNFDTKLIKDEEI 335
+E E+++ I + K++++E +
Sbjct: 397 KAVEESENGEQRRGENEIHDEVEKKIVEEEGV 428
>At1g77720.1 68414.m09049 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 777
Score = 32.3 bits (70), Expect = 0.95
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
Query: 55 HPMAFTIDFGESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRK 114
+P +DFG+S + +KSQ+ Q M T Q+ + +
Sbjct: 134 NPSDRQMDFGKSAVTSLESNLDVQRKSQSLIGTSQDMEWDATNQAEASHLDACIGSKHQN 193
Query: 115 TQGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITN-RHIKSPVNDAHTKHASK 173
+SE S+ +DS S KI+ L + P N P T + S H+S
Sbjct: 194 LPSVDSEVSLKSEYKDS--SSLAKIQGQLGEFPNFLNQPRTRCSAVGSSWATTTLIHSSS 251
Query: 174 SPIVDSIMSRSDNY 187
+P++++ S +Y
Sbjct: 252 APMLNATTHVSRSY 265
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 32.3 bits (70), Expect = 0.95
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 66 SKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPT-------AQRPPMSAKLPRKTQGY 118
SK +R E+ ++ ++RH+R ++ S R+SPT ++R S +
Sbjct: 756 SKEDRGKRKEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVSPSPV 815
Query: 119 NSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSPIVD 178
S SS D S + +S +N + + RH+ S H+KH+ +
Sbjct: 816 RSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRRHVSS--RSPHSKHSQHKNTLY 873
Query: 179 SIMSRSDNYSYLSR 192
S +S + SR
Sbjct: 874 SSHDKSRSKRSRSR 887
>At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1)
identical to telomeric DNA-binding protein 1
[Arabidopsis thaliana] gi|13641340|gb|AAK31590
Length = 640
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 251 NGVPTPEHYKSP-STRKGRATSETPDLFKKCMIKETLYIDDEVDRESNNSSTGTYTIEGD 309
NG P K+P S+R+ + + D + C I + ++ ES +SST TY E D
Sbjct: 13 NGFDFPNIPKAPRSSRRKVSGKRSDDESEICAIDLLASLAGKLLEESESSSTSTYASEAD 72
Query: 310 NYTE-EQKARMSIDRNFDTKLIKDE 333
N + ++ + TK K E
Sbjct: 73 NLDHLGGLIKQELEDGYTTKPCKSE 97
>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
subunit 7, putative / eIF-3 zeta, putative / eIF3d,
putative similar to initiation factor 3d [Arabidopsis
thaliana] GI:12407755, SP|O15371 Eukaryotic translation
initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
(eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)
Length = 591
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 260 KSPSTRKGRATSETPDLFKKCMIKETLYIDDEVDRESNNSSTGTYTIEGDNYTEEQKA 317
K PS + R PD F+ ++E L D++V N+ ++ TEE+KA
Sbjct: 529 KDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEENTEGAEASVAATKETEEKKA 586
>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 609
Score = 31.5 bits (68), Expect = 1.7
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 8/213 (3%)
Query: 65 ESKPVDNRRLEQLAKKSQAR-HQRVQSMSASLTR-QSPTAQRPPMSAKLPRKTQGYNSEG 122
+ KP+ ++ + S + + QS + S+TR Q+P +R P+ K Q NS+
Sbjct: 146 KEKPLVTSSTDRTLRPSSSNIAHKQQSETTSVTRKQTPERKRSPLKGKNVSPGQSENSKP 205
Query: 123 YFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSPIVDSIMS 182
S + + + N + R + P+++ ++H S + + S
Sbjct: 206 MDGS--HSMLIPPQHRWSGRIRGNRSFDLGDKAVRRVSLPLSNKSSRHKKSSSDITRLFS 263
Query: 183 RSDNYSYLSRQALNLPLKSNTYSKEMHRTPSYNNLY-QTRPVTHIVDESPEAVLLTDISS 241
DN + S+T S + T S L+ + P + SP + SS
Sbjct: 264 CYDNGRLEVSSSTTSEDSSSTESLKHFSTSSLPRLHPMSAPGSRTA--SPSRSSFSSSSS 321
Query: 242 PELDILTPDNGVPTPEHYKSPSTRKGRATSETP 274
++P GV +P SP + S TP
Sbjct: 322 SNSRGMSPSRGV-SPMRGLSPVGNRSLVRSSTP 353
>At2g38070.1 68415.m04673 expressed protein and genscan
Length = 619
Score = 31.1 bits (67), Expect = 2.2
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 198 PLKSNTYSKEMHRTPSYNNLYQTRPVTHI-VDESPEAVLLTDISSPELDILTPDNGVPTP 256
P++ + + +P N+++ R THI V++SP+ +S +D + P T
Sbjct: 354 PMRMPSMLSVVEDSPVRNHVH--RSDTHIPVEKSPQ------VSEAVIDEIVPGGSAQTR 405
Query: 257 EHYKSPSTRKGRATSETPDLFKKCMIKETLYIDD---EVDRESNNSSTGTYTIEGDNYTE 313
E+Y S+ + R + + +K ID+ DRE+ + + + ++ D +
Sbjct: 406 EYYLDSSSSRRRKSLDRSSSTRKLSASVMAEIDELKLTQDREAKDLVSHSNSLRDDCCSV 465
Query: 314 EQKARMSIDRNFDT 327
E M + N T
Sbjct: 466 ENNYEMGVRENVGT 479
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 3.8
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 206 KEMHRTPSYN-NLYQTRPVTHIVDESP--EAVLLTDISSPELDI--LTPDNGVPTPEHYK 260
++ H +PS N T+PV+ D SP + D SPE + L+ D P H
Sbjct: 153 RKRHNSPSPEPNRKHTKPVSLDSDMSPPRKRKARNDSPSPEPEAKYLSEDLSPPRRRHVH 212
Query: 261 SPSTRKGRATSETPDL 276
SPS R S++ +L
Sbjct: 213 SPSRESSRKRSDSVEL 228
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 30.3 bits (65), Expect = 3.8
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 328 KLIKDEEIFKQRSRDPELILDFTQRVITKEPRRDTYLRSPVEANKGFNVPKVSKDKNVLE 387
KL + Q R PE++ + +R + RR+++L + N+G V +D +++
Sbjct: 65 KLPMSDSFELQPHRRPEIVHVYCRRKRRRRRRRESFLELAILQNEG-----VERDDRIVK 119
Query: 388 ISCCYESPTENDLATQTSKQIKSTRSYLEKIKNRVRTITEKTFAKSPPIHG 438
I E E + + KQ K E +K V + T A +PP+ G
Sbjct: 120 IESA-ELDDEKEEENKKKKQKKRRIGNGELMKLGVDSTTLSVSA-TPPLRG 168
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 29.9 bits (64), Expect = 5.1
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 119 NSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSPIVD 178
+ E Y D+ + GS+ + LA A N +T + D + S+
Sbjct: 55 DDEEYHLFDKREGAGLGSLSDMDDLATTFAKLNRNVTGPKHLGVIGDRGSGSFSRESSTA 114
Query: 179 SIMSRSDNY-SYLSRQALNLPLKSNTYSKEMHRTPSYNNLYQT 220
+ ++ + + S+L + + ++ ++S + +P+ N+LY+T
Sbjct: 115 TDWTQDNEFTSWLDQHTVEEQVQEASWSSQPQSSPNSNSLYRT 157
>At5g03640.1 68418.m00323 protein kinase family protein contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 926
Score = 29.5 bits (63), Expect = 6.7
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 402 TQTSKQIKSTRSYLEKIKN-----RVRTITEKTFAKSPPIHGEEPDFGSFTSVTTSGVLS 456
+QTSK+ + L+K KN + +I K F S P G SV +L
Sbjct: 201 SQTSKRYCDEMTILKKHKNLSLDDQEMSIENKNFGSSSPGSGNNKTVVGLKSVRKVRLLY 260
Query: 457 SKNPSKLVTSSGRRCSLTKS 476
+ PS + + R LT++
Sbjct: 261 ANTPSSTIVNGKRVAKLTRT 280
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 29.5 bits (63), Expect = 6.7
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 47 SESSTPKIHPMAFTIDFGESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPP 106
S +S+P+ ++ + ++K + +R + L + + + + + S T +
Sbjct: 847 SNTSSPRQTNHSYITTYNKAKEAEIQRAQALQHALDEKEMEPEMLE--IVKGSKTRAQAM 904
Query: 107 MSAKLPRKTQGYNSEGYFSSDQEDSGLSGSIKI-RNSLAQNPAHTNSPITNRHIKSPVN 164
+ A + + E + QE L G ++ R+S+ ++ H N I + H SP N
Sbjct: 905 VDAAIKAASSVKEGEDVNTMIQEALELVGKNQLLRSSMVKHHEHVNGSIEHHHNPSPSN 963
>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 486
Score = 29.5 bits (63), Expect = 6.7
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 37 DEIEVGQDEKSESS-TPKIHPMA----FTIDFGESKPVDNRR-------LEQLAKKSQAR 84
DE E+G D K ES+ T + +A IDF + P +RR +EQ KK++A
Sbjct: 295 DEKEIGNDNKRESTMTSRQRALASGRSSAIDFSDGLPPTSRRKKETLSEMEQQLKKAEAA 354
Query: 85 HQRVQSMSASLTRQSPTAQRPPMSAKLPRKTQG 117
+R + + A + + RK +G
Sbjct: 355 QRRKVQIEKAARESEEGAIKKILGQDSSRKKRG 387
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 29.5 bits (63), Expect = 6.7
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 353 VITKEPRRDTYLRSPVEANKG-FNVPKVSKDKNVLEISCCYESPTENDLATQTSKQIKST 411
V +P++D + NK K+ ++NV + + C ES T D++ + K ++ T
Sbjct: 89 VSQSKPQQDKETNEQMNNNKKKLKSSKIEFERNVSKSNKCVESSTLIDVSAKGPKNVEVT 148
Query: 412 RSYLEKIKNRVRTITEKTFAKS 433
+ ++ V TE FA S
Sbjct: 149 TAPPDEQSAAVGRSTELYFASS 170
>At2g34640.1 68415.m04255 expressed protein
Length = 527
Score = 29.5 bits (63), Expect = 6.7
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 256 PEHYKSPSTRKGRATSETPDLFKKCMIKETLYIDDEVDRESNNSSTGTYTIEGDNYTEEQ 315
P + K+P +R+ + T + E +D + E N+SS G T + + EE+
Sbjct: 138 PSYGKNPGSRRKKNRKATEENVTVETNDEVSDSEDSSEEEENDSSDGFVTYKNEFEREEE 197
Query: 316 KARMSIDR 323
+ +D+
Sbjct: 198 ETGFELDK 205
>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
heavy chain-like protein, potato, PIR:T07397
Length = 625
Score = 29.1 bits (62), Expect = 8.9
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 137 IKIRNSLAQNPAHTNSPITNRHIKS-PVNDAHTKHASKSPIVDSIMSRSDNYSYLSRQAL 195
+KIR S P S + +R ++ + + K S + ++ S + S +
Sbjct: 493 VKIRKSSGFVPRFMTSTVASRQRQTMSEKEINAKAQSIRSVAKNLTQFSTSQSLSLSDSR 552
Query: 196 NLPLKSNTYSKEMHRTPSYNNLYQTRPVTHIVDESPEAVLLTDISSPELDILT 248
+ L +Y+K + + +T P HI D S + + D SSP ++T
Sbjct: 553 SKALLRRSYTKPLQAAANSGTPPET-PKRHIKDNSLQRKNMNDTSSPRSKMVT 604
>At5g24260.1 68418.m02854 prolyl oligopeptidase family protein
similar to dipeptidyl peptidase IV [Stenotrophomonas
maltophilia] GI:1753197; contains Pfam profiles PF00326:
prolyl oligopeptidase family, PF00930: Dipeptidyl
peptidase IV (DPP IV) N-terminal region
Length = 746
Score = 29.1 bits (62), Expect = 8.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 197 LPLKSNTYSKEMHRTPSYNNLYQTRPVTHIVDE--SPEAVLLTDISSPELDIL 247
+PL + Y K++ +P+ + + P + I+D SP + L + EL +L
Sbjct: 111 VPLPAGVYMKDLSSSPNPELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVL 163
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 29.1 bits (62), Expect = 8.9
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 84 RHQRVQSMSASLTRQSPTAQRPPMS-AKLPRKTQGYNSEGYFSSDQEDSGLSGSIKIRNS 142
RH V S+S SL + P PP S L R + S SS +KI
Sbjct: 24 RHSPVASISFSLKQPPPQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIPSPKTPLKINPL 83
Query: 143 LAQNPAHTNSPITNRHIKSPVNDAHTKHASK 173
+ SP+ + S V+ + ASK
Sbjct: 84 KGLTNRSSVSPLVQSEVSSKVSSFGSSLASK 114
>At1g56200.1 68414.m06459 expressed protein
Length = 154
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 64 GESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRPPMSAKLPRKTQGYNSEGY 123
G S + +RR L S + + + ++TR+SPT + P+ +K + +G+
Sbjct: 46 GLSSGLGSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSPSLDDGGDGF 105
Query: 124 FSSDQEDSGLSG 135
D D G G
Sbjct: 106 PPRDDGDGGGGG 117
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 29.1 bits (62), Expect = 8.9
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 8/156 (5%)
Query: 64 GESKPVDNRRLEQLAKKSQARHQRVQSMSASLTRQSPTAQRP--PMSAKLPRKTQGYNSE 121
G S + +L Q ++ Q + Q+ Q +Q +Q S++ QG S
Sbjct: 578 GPSPQQASDQLRQQQQQQQQQQQQQQQQQQQQQQQQTVSQNTNSDQSSRQVALMQGNPSN 637
Query: 122 GYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHASKSPIVDSIM 181
G + S + + I + QN + RH + N ++ + S + S
Sbjct: 638 GVNYAFNAASASTSTSSIAGLIHQNS------MKGRHQNAAYNPPNSPYGGNSVQMQSPS 691
Query: 182 SRSDNYSYLSRQALNLPLKSNTYSKEMHRTPSYNNL 217
S S+Q NLP + S + PS N +
Sbjct: 692 SSGTMVPSSSQQQHNLPTFQSPTSSSNNNNPSQNGI 727
>At1g08300.1 68414.m00916 expressed protein
Length = 509
Score = 29.1 bits (62), Expect = 8.9
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 113 RKTQGYNSEGYFSSDQEDSGLSGSIKIRNSLAQNPAHTNSPITNRHIKSPVNDAHTKHAS 172
+++ ++S Y S+++E L S K R + ++N ++SP R S + H K
Sbjct: 366 KRSDHFSSCPYSSAEEEVKQLGSSSKKRKAESRNHEKSDSPKLLRRGPSKLRRGHVKQKI 425
Query: 173 KSPIVDS---IMSRSDNYSYLSRQALNL 197
DS I S +D LS AL L
Sbjct: 426 PKSADDSDAQIFSVNDADFTLSEGALKL 453
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.125 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,211
Number of Sequences: 28952
Number of extensions: 597665
Number of successful extensions: 1520
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1510
Number of HSP's gapped (non-prelim): 34
length of query: 603
length of database: 12,070,560
effective HSP length: 85
effective length of query: 518
effective length of database: 9,609,640
effective search space: 4977793520
effective search space used: 4977793520
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)
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