Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000074-TA|BGIBMGA000074-PA|IPR000692|Fibrillarin
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...   378   e-106
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    29   1.1  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    28   1.5  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    28   2.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   2.6  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   4.6  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   8.0  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score =  378 bits (930), Expect = e-106
 Identities = 178/230 (77%), Positives = 204/230 (88%), Gaps = 1/230 (0%)

Query: 81  QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVEN-EGDKVEYRVWNPFRSK 139
           +VIIEPHRH GVFIARGKED LVT+NLVPG  VY EKRISV++ +G KVEYRVWNPFRSK
Sbjct: 72  KVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSK 131

Query: 140 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 199
           LAA I+GG+D I++ PG+RVLYLGAA+GT+VSHV+DVVGPEGLVYAVEFSHRSGRDL+N+
Sbjct: 132 LAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLNM 191

Query: 200 AKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVIS 259
           AKKRTN+IPI+EDARH  KYRMLVGMVD +FADVAQPDQARIV+LNA  FLKN G  VIS
Sbjct: 192 AKKRTNVIPIVEDARHVQKYRMLVGMVDVVFADVAQPDQARIVALNAAAFLKNEGGVVIS 251

Query: 260 IKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVF 309
           +KASCIDSTA    VFA EVKK+Q +K+KPQEQLTLEPYERDH ++VG +
Sbjct: 252 VKASCIDSTADAAVVFAREVKKMQEEKIKPQEQLTLEPYERDHCIIVGKY 301


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 116 EKRISVENEGDKVEYRVWNPFRS 138
           E R+   N+G   +YR WN FRS
Sbjct: 11  ETRLCPSNQGSAKKYRPWNDFRS 33


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 249 FLKNGGHFVISIKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLE 296
           FL+N  H  +     C+ S  + ++V   E++++  DK +P E++T++
Sbjct: 327 FLQNVRHRHMKYIDRCVTSIFRIDSVIEEELRRMMGDK-EPNEEITIK 373


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 153 MAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVE 187
           + PG   L +G+ SG  V+ ++ +V P G V  +E
Sbjct: 76  LQPGCSALDIGSGSGYLVAAMARMVAPNGTVKGIE 110


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 162 LGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPLKY 219
           LGAA   +   ++ ++    ++YA++F  R+G  +I ++  R   + I   A+  LKY
Sbjct: 130 LGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKY 187


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 173 VSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIP 208
           V DV+ P+G  + V     S +DL  VA    NI+P
Sbjct: 193 VKDVILPQGYYFGVSSQSTSAKDL--VALSNLNILP 226


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 156 GSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEF 188
           G+RV+  G  S +    +S  VGP G ++  E+
Sbjct: 104 GTRVIEAGTGSASMSHAISRTVGPLGRLFTFEY 136


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,075,710
Number of Sequences: 5004
Number of extensions: 39557
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 8
length of query: 315
length of database: 2,362,478
effective HSP length: 73
effective length of query: 242
effective length of database: 1,997,186
effective search space: 483319012
effective search space used: 483319012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)