Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000074-TA|BGIBMGA000074-PA|IPR000692|Fibrillarin
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)                398   e-111
SB_3089| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_34237| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               29   4.9  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 29   6.5  
SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)                 28   8.6  
SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
          Length = 304

 Score =  398 bits (979), Expect = e-111
 Identities = 189/221 (85%), Positives = 205/221 (92%), Gaps = 2/221 (0%)

Query: 91  GVFIARGKEDALVTKNLVPGSEVYGEKRISVEN--EGDKVEYRVWNPFRSKLAAAIMGGV 148
           GVFIARGKEDALVTKNLVPG  VYGEK+ISV+   EG+K+EYRVWNPFRSKLAAAI+GGV
Sbjct: 83  GVFIARGKEDALVTKNLVPGETVYGEKKISVDGVAEGEKIEYRVWNPFRSKLAAAILGGV 142

Query: 149 DAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIP 208
           D IHM PGS+VLYLGAASGTTVSHVSD+VGPEGLVYAVEFSHRSGRDLINVAKKRTNI+P
Sbjct: 143 DKIHMPPGSKVLYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRSGRDLINVAKKRTNIVP 202

Query: 209 IIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVISIKASCIDST 268
           IIEDARHP KYRMLVGMVD IFADVAQPDQ RIV++NA +FLKNGGHFVISIKA+CIDST
Sbjct: 203 IIEDARHPHKYRMLVGMVDCIFADVAQPDQTRIVAINAHNFLKNGGHFVISIKANCIDST 262

Query: 269 AQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVF 309
           AQP AVFA EVKK+  +K+KPQEQLTLEPYERDHAVVVG +
Sbjct: 263 AQPAAVFAGEVKKMVGEKMKPQEQLTLEPYERDHAVVVGTY 303


>SB_3089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 228 TIFADVAQPDQARIVSLNAQHFLKNGGHFVISIKASCIDSTAQPEAVF 275
           T+  D+ Q  +A+  SL A HFLKN       I  +C DS A PE  +
Sbjct: 6   TLTFDMWQNIRAKSFSLAASHFLKNYQFSKQGINVTCEDS-ATPEGCY 52


>SB_34237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 146 GGVDAIHMA-PGSRVL-YLGAASGTTVSHVSDVVGPEG--LVYAVEFSHRSGRDLINVAK 201
           GG D    A PG  V+ Y+G+  G      +   GPE   ++YAV +  R GRD  ++ K
Sbjct: 26  GGKDEKRKAGPGKPVIIYVGSNGGKDEKRKA---GPEKPVIIYAVSYGERDGRDNADIGK 82


>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1485

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 251 KNGGHFVISIKASCIDSTAQPEAVFAAEVKKLQAD 285
           +  GH ++ +   C D+ AQ    F+A  KKL+A+
Sbjct: 768 EKSGHKMVQVTQDCWDNDAQKRPTFSAIKKKLKAN 802


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 103 VTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGGVDAIHMAPGSRVLYL 162
           V  N V G EV GEK ++ + +G+KV           L   + G     +   G +VL  
Sbjct: 144 VLSNQVQGEEVQGEKVLTNQVQGEKV-----------LTNQVQGEKVLTNQVQGEKVLTN 192

Query: 163 GAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDL-INVAKKRTNIIPII 210
                   +   ++V  E   + ++   ++G  L +NV+K R N +P++
Sbjct: 193 QVIDAIFSAEKPELVDVEFKSHGIKDFIKTGFSLFMNVSKPRPNDLPLL 241


>SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 135 PFRSKLAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLV 183
           P  + + A I+ GV + +   G+R L+LGA S  T         P+GLV
Sbjct: 97  PSSNDITAIILVGVVSFYGGVGNRPLWLGAGSIITALGTLIFTIPQGLV 145


>SB_16493| Best HMM Match : NACHT (HMM E-Value=1.1e-08)
          Length = 833

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 191 RSGRDLINVAKKRTNIIPIIEDARHPLKYRMLVGMVDTIFAD 232
           R  +DL+ V +   N++ ++    H   YR   G  D +FAD
Sbjct: 182 REHQDLVRVRRHLDNVVELVPPELHDFIYRFFPG--DRVFAD 221


>SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 156 GSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFS 189
           G R+L LG+ SG     +S +VG EG +  V+ +
Sbjct: 15  GCRILDLGSGSGRDCYVLSKLVGEEGFITGVDMT 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,056
Number of Sequences: 59808
Number of extensions: 299263
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 9
length of query: 315
length of database: 16,821,457
effective HSP length: 82
effective length of query: 233
effective length of database: 11,917,201
effective search space: 2776707833
effective search space used: 2776707833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)