Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000074-TA|BGIBMGA000074-PA|IPR000692|Fibrillarin
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide...   394   e-110
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...   393   e-110
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...   308   2e-84
At5g14600.1 68418.m01712 expressed protein                             36   0.035
At3g48330.2 68416.m05275 protein-L-isoaspartate O-methyltransfer...    30   1.8  
At3g48330.1 68416.m05274 protein-L-isoaspartate O-methyltransfer...    30   1.8  
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea...    30   2.3  
At2g45200.1 68415.m05628 Golgi SNARE 12 protein / Golgi SNAP rec...    30   2.3  
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro...    29   3.1  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    29   3.1  
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    29   5.4  
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro...    29   5.4  

>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
           identical to fibrillarin 1 GI:9965653 from [Arabidopsis
           thaliana]; C-terminus identical to SKP1 interacting
           partner 7 GI:10716959 from [Arabidopsis thaliana];
           contains Pfam domain PF01269: Fibrillarin
          Length = 308

 Score =  394 bits (969), Expect = e-110
 Identities = 187/236 (79%), Positives = 210/236 (88%), Gaps = 1/236 (0%)

Query: 81  QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 139
           +VI+EPHRH GVFIA+GKEDALVTKNLVPG  VY EKRISV+NE G KVEYRVWNPFRSK
Sbjct: 68  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSK 127

Query: 140 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 199
           LAAAI+GGVD I + PG++VLYLGAASGTTVSHVSD+VGPEG VYAVEFSHRSGRDL+N+
Sbjct: 128 LAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNM 187

Query: 200 AKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVIS 259
           AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQARI++LNA  FLK GGHFVIS
Sbjct: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVIS 247

Query: 260 IKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPKK 315
           IKA+CIDST   EAVF +EVKKLQ ++ KP EQ+TLEP+ERDHA VVG +R P K+
Sbjct: 248 IKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQ 303


>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score =  393 bits (967), Expect = e-110
 Identities = 186/235 (79%), Positives = 209/235 (88%), Gaps = 1/235 (0%)

Query: 81  QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 139
           +VI+EPHRH GVFIA+GKEDALVTKNLVPG  VY EKRISV+NE G K EYRVWNPFRSK
Sbjct: 79  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSK 138

Query: 140 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 199
           LAAAI+GGVD I + PG++VLYLGAASGTTVSHVSD+VGPEG VYAVEFSHRSGRDL+N+
Sbjct: 139 LAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNM 198

Query: 200 AKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVIS 259
           AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQARI++LNA +FLK+GGHFVIS
Sbjct: 199 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVIS 258

Query: 260 IKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPK 314
           IKA+CIDST   EAVF  EVKKLQ ++ KP EQ+TLEP+ERDHA VVG +R P K
Sbjct: 259 IKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKK 313


>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score =  308 bits (757), Expect = 2e-84
 Identities = 152/235 (64%), Positives = 182/235 (77%), Gaps = 1/235 (0%)

Query: 81  QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEG-DKVEYRVWNPFRSK 139
           +V++ PHRH GVF+A+ K DALVTKNLVPG  +Y EKRI V+NE    VEYRVWNP RSK
Sbjct: 58  KVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHRSK 117

Query: 140 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 199
           LA AI  GVD I + PG +VLYLGA+SG TVSHVSD+VGPEG VYAVE S   G+ L+N+
Sbjct: 118 LADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICGKVLMNM 177

Query: 200 AKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVIS 259
           A+KRTN+IPIIEDARHP KYRMLVGMVD IF+DV  P+QA I+SLNA +FLK+GGHF+IS
Sbjct: 178 AEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMIS 237

Query: 260 IKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPK 314
           IKA+ IDST   E V+  EV+KLQ ++L+P E L L+  E  HA V G +R P K
Sbjct: 238 IKANSIDSTIAAETVYQMEVEKLQMEELRPTEILHLDSCEEKHACVFGGYRLPRK 292


>At5g14600.1 68418.m01712 expressed protein
          Length = 318

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 151 IHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHR---SGRDLINVAKKRTNII 207
           + + PG  VL  G  SG+  + ++  V P G VY+ +F  +   S R+        + + 
Sbjct: 104 LEVVPGCVVLESGTGSGSLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVT 163

Query: 208 PIIEDARHPLKYRMLVGMVDTIFADVAQP 236
             + D +       L G+ D++F D+ QP
Sbjct: 164 VEVRDIQGEGFPEKLSGLADSVFLDLPQP 192


>At3g48330.2 68416.m05275 protein-L-isoaspartate O-methyltransferase
           / PIMT (PCM) identical to SP|Q42539
           Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
           (Protein- beta-aspartate methyltransferase) (PIMT)
           (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
           protein carboxyl methyltransferase) {Arabidopsis
           thaliana}
          Length = 230

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 152 HMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVE 187
           H+ PG RVL +G+ +G   +  + +VG EG    VE
Sbjct: 80  HLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVE 115


>At3g48330.1 68416.m05274 protein-L-isoaspartate O-methyltransferase
           / PIMT (PCM) identical to SP|Q42539
           Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
           (Protein- beta-aspartate methyltransferase) (PIMT)
           (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
           protein carboxyl methyltransferase) {Arabidopsis
           thaliana}
          Length = 230

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 152 HMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVE 187
           H+ PG RVL +G+ +G   +  + +VG EG    VE
Sbjct: 80  HLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVE 115


>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to will die slowly protein (WDS) (SP:Q9V3J8)
           [Drosophila melanogaster]
          Length = 589

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 183 VYAVEFSHRSGRDLINVAKKRTNII-PIIEDARHPLKYRMLVGMVDTIFADVAQPDQARI 241
           V+ ++FSH +G+ L + +K +T II  I  D    LK+  LVG    + A +  PD  ++
Sbjct: 277 VWFLQFSH-NGKYLASSSKDQTAIIWEISADGHISLKHT-LVGHHKPVIAILWSPDDRQV 334

Query: 242 VSLNAQHFLK 251
           ++  A+  ++
Sbjct: 335 LTCGAEEVIR 344


>At2g45200.1 68415.m05628 Golgi SNARE 12 protein / Golgi SNAP
           receptor complex member 1 identical to Probable 28 kDa
           Golgi SNARE protein (Golgi SNAP receptor complex member
           1) (SP:O22151) {Arabidopsis thaliana}
          Length = 239

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 153 MAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRS 192
           M+PG +VL   A+   ++SH+ DV+G      AV  S RS
Sbjct: 145 MSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLGSQRS 184


>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}
          Length = 409

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/76 (25%), Positives = 32/76 (42%)

Query: 138 SKLAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           S L   +  GVD + +   +  +Y G   G T++   + VG    +YA     R  R   
Sbjct: 162 STLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAF 221

Query: 198 NVAKKRTNIIPIIEDA 213
             A+KR   +  ++ A
Sbjct: 222 ETARKRRGKLCSVDKA 237


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
            protein (ROS1) similar to DEMETER protein [Arabidopsis
            thaliana] GI:21743571; contains Pfam profile PF00730:
            HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/97 (27%), Positives = 35/97 (36%)

Query: 200  AKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVIS 259
            AKK T   PIIE+   P      V + D   A    P++   + LN   F  N    +  
Sbjct: 1106 AKKVTCCEPIIEEPASPEPETAEVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEH 1165

Query: 260  IKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLE 296
             K     + +       AE   L   KLK   QL  E
Sbjct: 1166 NKELQDGNMSSALVALTAETASLPMPKLKNISQLRTE 1202


>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 233 VAQPDQARIVSLNAQHFLKNGGHFVISIKASC 264
           +  P  +     N Q FL +G  F +S+KASC
Sbjct: 334 INSPSSSETRRSNRQSFLSSGNTFCLSLKASC 365


>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}; EST gb|F14478 comes from this gene
          Length = 404

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/76 (25%), Positives = 32/76 (42%)

Query: 138 SKLAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           S L   +  GVD + +   +  +Y G   G T++   + VG    +YA     R  R   
Sbjct: 159 STLKKEVAQGVDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAF 218

Query: 198 NVAKKRTNIIPIIEDA 213
             A+KR   +  ++ A
Sbjct: 219 ETARKRRGKLCSVDKA 234


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,746,715
Number of Sequences: 28952
Number of extensions: 212603
Number of successful extensions: 476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 12
length of query: 315
length of database: 12,070,560
effective HSP length: 81
effective length of query: 234
effective length of database: 9,725,448
effective search space: 2275754832
effective search space used: 2275754832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)