Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000074-TA|BGIBMGA000074-PA|IPR000692|Fibrillarin
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909... 394 e-110
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 353 1e-97
01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898 33 0.30
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 33 0.39
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 33 0.39
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 31 1.6
11_06_0560 - 24978894-24979030,24979106-24979310,24979421-249797... 29 6.4
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 29 6.4
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399... 29 6.4
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 28 8.5
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 28 8.5
>02_05_1258 +
35290183-35290198,35290292-35290599,35290844-35290939,
35291067-35291144,35291224-35291400,35292738-35292806,
35292917-35293093
Length = 306
Score = 394 bits (971), Expect = e-110
Identities = 184/236 (77%), Positives = 213/236 (90%), Gaps = 1/236 (0%)
Query: 81 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 139
+V++ PH+H GVFIA+ KEDAL TKN+VPG VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 67 KVVVVPHKHNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 126
Query: 140 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 199
LAAA++GGVD I +APG+RVLYLGAASGTTVSHVSD+VGP GLVYAVEFSHRSGRDL+N+
Sbjct: 127 LAAAVLGGVDNIWIAPGTRVLYLGAASGTTVSHVSDIVGPTGLVYAVEFSHRSGRDLVNM 186
Query: 200 AKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVIS 259
AKKRTN+IPIIEDARHP +YRMLVGMVD IF+DVAQPDQARI++LNA +FLKNGGHFVIS
Sbjct: 187 AKKRTNVIPIIEDARHPARYRMLVGMVDVIFSDVAQPDQARILALNASYFLKNGGHFVIS 246
Query: 260 IKASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPKK 315
IKA+CIDST EAVFA+EV+KL+AD+ KP EQ+TLEP+ERDHA VVG +R P K+
Sbjct: 247 IKANCIDSTMPAEAVFASEVEKLKADQFKPSEQVTLEPFERDHACVVGGYRMPKKQ 302
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 353 bits (867), Expect = 1e-97
Identities = 183/278 (65%), Positives = 212/278 (76%), Gaps = 43/278 (15%)
Query: 81 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 139
+V++ PH+H GVFIA+ KEDAL TKN+VPG VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 70 KVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 129
Query: 140 LAAAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPE----------------GLV 183
LAAA++GGVD I +APG+RVLYLG ASGTTVSHVSD+VGP GLV
Sbjct: 130 LAAAVLGGVDNIWIAPGTRVLYLGGASGTTVSHVSDIVGPSPRYAILPFANQVILQTGLV 189
Query: 184 YAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVS 243
YAVEFSHRSGRDL+N+AKKRTN+IPIIEDARHP +YRMLVGMVD IF+DVAQPDQARI++
Sbjct: 190 YAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPARYRMLVGMVDVIFSDVAQPDQARILA 249
Query: 244 LNAQHFLKNGGHFVISIK--------------------------ASCIDSTAQPEAVFAA 277
LNA +FLKNGGHFVISIK A+CIDST EAVFA+
Sbjct: 250 LNASYFLKNGGHFVISIKIITLIEVEIGEILDVILGIGLKLFEQANCIDSTMPAEAVFAS 309
Query: 278 EVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPKK 315
EV+KL+AD+ KP EQ+TLEP+ERDHA VVG +R P K+
Sbjct: 310 EVEKLKADQFKPSEQVTLEPFERDHACVVGGYRMPKKQ 347
>01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898
Length = 632
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 131 RVWNPFRSKLAAAIMGGVDAIHMAPG-SRVLYLGAASGTTVSHVSDVVGP 179
R++NP R L A G+D I A G V YL A+S S V D + P
Sbjct: 354 RIYNPDREALDALRNSGIDLILDAGGFDTVSYLAASSSNAASWVHDNISP 403
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 148 VDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKR--TN 205
V + + PG VL G SG+ + ++ V P G V +F + ++ T+
Sbjct: 116 VSYLELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNDLTS 175
Query: 206 IIPI-IEDARHPLKYRMLVGMVDTIFADVAQP 236
II + + D + G D +F D+ QP
Sbjct: 176 IITVAVRDIQGQGFPEEHTGAADAVFLDLPQP 207
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 148 VDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKR--TN 205
V + + PG VL G SG+ + ++ V P G V +F + ++ T+
Sbjct: 116 VSYLELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNGLTS 175
Query: 206 IIPI-IEDARHPLKYRMLVGMVDTIFADVAQP 236
II + + D + G D +F D+ QP
Sbjct: 176 IITVAVRDIQGQGFPEEHTGAADAVFLDLPQP 207
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 152 HMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVE 187
H+ PG L +G+ SG + + +VGPEG +E
Sbjct: 136 HLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIE 171
>11_06_0560 -
24978894-24979030,24979106-24979310,24979421-24979748,
24980024-24980116,24980287-24980406,24982786-24982916
Length = 337
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 245 NAQHFLKNGGHFVISIKASCIDSTAQPEAVFAAEVKKLQADKL 287
N +H+ K HF ++K ST ++ AEVK+L K+
Sbjct: 239 NVEHYYKIFHHFNFTVKMKAPCSTDWTSVLYFAEVKELLGHKI 281
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 173 VSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPLKYRMLVGMVDTIFAD 232
V+ V E + A E +H L N++++R N II++ R+ L+ R V+T+ A+
Sbjct: 863 VAGEVFAEQSILASE-AHGLQARLSNISEERNNCALIIDEMRYTLQNRFAEAEVETVAAE 921
Query: 233 VAQPDQARIVS--LNAQHFL 250
+ ++ + LN Q +
Sbjct: 922 KKKVERETLAEKMLNEQELI 941
>05_03_0413 +
13639476-13639537,13639702-13639783,13639865-13639940,
13640016-13640101,13640294-13640370,13641138-13641194,
13641294-13641378,13642331-13642417,13642603-13642683,
13643748-13643885,13643962-13644147,13644242-13644268
Length = 347
Score = 28.7 bits (61), Expect = 6.4
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 93 FIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGGVD--A 150
F+A+ E LVTK EV + + E+ + + +N F KL+ + GG D A
Sbjct: 235 FLAKADEQVLVTKISPKSGEVLCKHKDKAEHFAHGLCEKCYNKF-MKLSGGLEGGSDPPA 293
Query: 151 IHMAPGSRVLYLGAASGTTVS 171
A R+ A GT S
Sbjct: 294 FQRAEKQRLEAAKNAKGTAAS 314
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 239 ARIVSLNAQHFLKNGGHFVISIKASCIDSTAQ--PEAVFAAEVKK--LQADKLKP 289
ARI S+ +QHF+ G H + IDS Q + + AE+ K Q D LKP
Sbjct: 979 ARIWSVLSQHFIAAGSHHEEKVAMYAIDSLRQLGMKYLERAELNKFTFQNDILKP 1033
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 106 NLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGGVDAIHMAPGS 157
+ VP Y EK I + G E W FR L ++G D I GS
Sbjct: 112 DFVPRQIAYKEKDILTNSSGFVTESLDWVIFRESLLQMLLGVEDGISSKEGS 163
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,422,258
Number of Sequences: 37544
Number of extensions: 283013
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 12
length of query: 315
length of database: 14,793,348
effective HSP length: 82
effective length of query: 233
effective length of database: 11,714,740
effective search space: 2729534420
effective search space used: 2729534420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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