GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000074-TA|BGIBMGA000074-PA|IPR000692|Fibrillarin
         (315 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA...   454   e-128
BT001738-1|AAN71493.1|  331|Drosophila melanogaster RE72617p pro...   452   e-127
BT023239-1|AAY55655.1|  349|Drosophila melanogaster IP10714p pro...   212   5e-55
AE014297-1590|AAF54870.1|  349|Drosophila melanogaster CG10909-P...   212   5e-55
X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin pr...    59   9e-09
BT011175-1|AAR88536.1|  450|Drosophila melanogaster RH33950p pro...    34   0.22 
AY060904-1|AAL28452.1|  358|Drosophila melanogaster GM05221p pro...    34   0.22 
AE014296-3735|AAF51875.1|  358|Drosophila melanogaster CG11109-P...    34   0.22 
AE014296-3734|AAN12208.1|  439|Drosophila melanogaster CG11109-P...    34   0.22 
AE013599-118|AAF57301.2| 1976|Drosophila melanogaster CG14470-PA...    30   3.6  
BT001829-1|AAN71584.1|  450|Drosophila melanogaster RH45546p pro...    29   6.3  
AE014296-3325|AAF49033.2|  450|Drosophila melanogaster CG6680-PB...    29   6.3  
AE014296-3324|AAF49034.2|  450|Drosophila melanogaster CG6680-PA...    29   6.3  

>AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA
           protein.
          Length = 344

 Score =  454 bits (1118), Expect = e-128
 Identities = 214/234 (91%), Positives = 225/234 (96%)

Query: 82  VIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 141
           V IEPHRH GVFIARGKEDALVT+N VPGSEVYGEKRISVE  G+K+EYRVWNPFRSKLA
Sbjct: 111 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVETNGEKIEYRVWNPFRSKLA 170

Query: 142 AAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 201
           AA++GGV+ IHM PGS+VLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK
Sbjct: 171 AAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 230

Query: 202 KRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVISIK 261
           KRTNIIPIIEDARHP KYRMLVGMVDTIFADVAQPDQ RIV+LNAQHFLKNGGHFVISIK
Sbjct: 231 KRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISIK 290

Query: 262 ASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPKK 315
           ASCIDSTAQPEAVFAAEVKK+QADKLKPQEQLTLEPYERDHAVVVGV+RPPPK+
Sbjct: 291 ASCIDSTAQPEAVFAAEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 344


>BT001738-1|AAN71493.1|  331|Drosophila melanogaster RE72617p
           protein.
          Length = 331

 Score =  452 bits (1114), Expect = e-127
 Identities = 214/234 (91%), Positives = 224/234 (95%)

Query: 82  VIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 141
           V IEPHRH GVFIARGKEDALVT N VPGSEVYGEKRISVE  G+K+EYRVWNPFRSKLA
Sbjct: 98  VTIEPHRHEGVFIARGKEDALVTGNFVPGSEVYGEKRISVETNGEKIEYRVWNPFRSKLA 157

Query: 142 AAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 201
           AA++GGV+ IHM PGS+VLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK
Sbjct: 158 AAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 217

Query: 202 KRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVISIK 261
           KRTNIIPIIEDARHP KYRMLVGMVDTIFADVAQPDQ RIV+LNAQHFLKNGGHFVISIK
Sbjct: 218 KRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISIK 277

Query: 262 ASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRPPPKK 315
           ASCIDSTAQPEAVFAAEVKK+QADKLKPQEQLTLEPYERDHAVVVGV+RPPPK+
Sbjct: 278 ASCIDSTAQPEAVFAAEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 331


>BT023239-1|AAY55655.1|  349|Drosophila melanogaster IP10714p
           protein.
          Length = 349

 Score =  212 bits (518), Expect = 5e-55
 Identities = 108/229 (47%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 84  IEPHRHPGVFIARGKEDA--LVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 141
           IEPHRH GV++ R + DA  L+T+N    ++ YGE+R+  E    + E+RVW+PF+SKLA
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERRVISEYREMRCEFRVWSPFQSKLA 173

Query: 142 AAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 201
           A IMGGV  +H+  GS+VLYLGA  G +VSH+SD+VG  G+VYAVE    +GR L  +A 
Sbjct: 174 AGIMGGVSDLHLQIGSKVLYLGAGFGRSVSHISDIVGDSGMVYAVEQIPWAGRQLTIMAN 233

Query: 202 KRTNIIPIIEDARHPLKYRMLV-GMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVISI 260
           +R+NI+PI+EDA  P KYR  V   +D IFAD+      R + LNA+HFL  GGHFV  +
Sbjct: 234 RRSNIVPIVEDATMPYKYRYEVPACIDIIFADLPPSVLIRALMLNARHFLNPGGHFVAYL 293

Query: 261 KASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVF 309
            +         +  FAAE + L+  +L+P+E + LEP++  +A VVGV+
Sbjct: 294 HSPTSQGVVFNKDSFAAERRLLKEKQLEPKEMVLLEPFKAGYAFVVGVY 342


>AE014297-1590|AAF54870.1|  349|Drosophila melanogaster CG10909-PA
           protein.
          Length = 349

 Score =  212 bits (518), Expect = 5e-55
 Identities = 108/229 (47%), Positives = 151/229 (65%), Gaps = 3/229 (1%)

Query: 84  IEPHRHPGVFIARGKEDA--LVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 141
           IEPHRH GV++ R + DA  L+T+N    ++ YGE+R+  E    + E+RVW+PF+SKLA
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERRVISEYREMRCEFRVWSPFQSKLA 173

Query: 142 AAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 201
           A IMGGV  +H+  GS+VLYLGA  G +VSH+SD+VG  G+VYAVE    +GR L  +A 
Sbjct: 174 AGIMGGVSDLHLQIGSKVLYLGAGFGRSVSHISDIVGDSGMVYAVEQIPWAGRQLTIMAN 233

Query: 202 KRTNIIPIIEDARHPLKYRMLV-GMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVISI 260
           +R+NI+PI+EDA  P KYR  V   +D IFAD+      R + LNA+HFL  GGHFV  +
Sbjct: 234 RRSNIVPIVEDATMPYKYRYEVPACIDIIFADLPPSVLIRALMLNARHFLNPGGHFVAYL 293

Query: 261 KASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVF 309
            +         +  FAAE + L+  +L+P+E + LEP++  +A VVGV+
Sbjct: 294 HSPTSQGVVFNKDSFAAERRLLKEKQLEPKEMVLLEPFKAGYAFVVGVY 342


>X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin
           protein.
          Length = 147

 Score = 58.8 bits (136), Expect = 9e-09
 Identities = 26/30 (86%), Positives = 27/30 (90%)

Query: 82  VIIEPHRHPGVFIARGKEDALVTKNLVPGS 111
           V IEPHRH GVFIARGKEDALVT+N VPGS
Sbjct: 118 VTIEPHRHEGVFIARGKEDALVTRNFVPGS 147


>BT011175-1|AAR88536.1|  450|Drosophila melanogaster RH33950p
           protein.
          Length = 450

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 155 PGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           PG R+L + AA G   SH+++++G  G V A++ S    R ++
Sbjct: 227 PGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSML 269


>AY060904-1|AAL28452.1|  358|Drosophila melanogaster GM05221p
           protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 155 PGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           PG R+L + AA G   SH+++++G  G V A++ S    R ++
Sbjct: 146 PGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSML 188


>AE014296-3735|AAF51875.1|  358|Drosophila melanogaster CG11109-PA,
           isoform A protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 155 PGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           PG R+L + AA G   SH+++++G  G V A++ S    R ++
Sbjct: 146 PGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSML 188


>AE014296-3734|AAN12208.1|  439|Drosophila melanogaster CG11109-PB,
           isoform B protein.
          Length = 439

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 155 PGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           PG R+L + AA G   SH+++++G  G V A++ S    R ++
Sbjct: 227 PGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSML 269


>AE013599-118|AAF57301.2| 1976|Drosophila melanogaster CG14470-PA
            protein.
          Length = 1976

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 93   FIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNP 135
            ++  G+  A V + L P SE  GE + + E++ D   Y+V  P
Sbjct: 1307 YVKLGETTATVVRPLNPNSEGVGENKSATESDEDNYNYKVKLP 1349


>BT001829-1|AAN71584.1|  450|Drosophila melanogaster RH45546p
           protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 118 RISVENEGDKVEYRVWNPFRSKLAAAI-MGGVDAIHMAPGSRVL--YLGAASGTTVSHVS 174
           RI+VE+E  +  Y+VW+ F +   + I +  + AI+   G  +   Y  A     V  + 
Sbjct: 129 RINVEDEKLRGAYKVWSSFLNITTSTIEVATLQAIYTGKGYPIKNNYRDAIQNYNVQPME 188

Query: 175 -DVVGPEGLVYAVEFSHRSGRDLI 197
            D   P+ ++   E ++R+ R LI
Sbjct: 189 VDFYSPDSVIQINEDTNRTTRGLI 212


>AE014296-3325|AAF49033.2|  450|Drosophila melanogaster CG6680-PB,
           isoform B protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 118 RISVENEGDKVEYRVWNPFRSKLAAAI-MGGVDAIHMAPGSRVL--YLGAASGTTVSHVS 174
           RI+VE+E  +  Y+VW+ F +   + I +  + AI+   G  +   Y  A     V  + 
Sbjct: 129 RINVEDEKLRGAYKVWSSFLNITTSTIEVATLQAIYTGKGYPIKNNYRDAIQNYNVQPME 188

Query: 175 -DVVGPEGLVYAVEFSHRSGRDLI 197
            D   P+ ++   E ++R+ R LI
Sbjct: 189 VDFYSPDSVIQINEDTNRTTRGLI 212


>AE014296-3324|AAF49034.2|  450|Drosophila melanogaster CG6680-PA,
           isoform A protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 118 RISVENEGDKVEYRVWNPFRSKLAAAI-MGGVDAIHMAPGSRVL--YLGAASGTTVSHVS 174
           RI+VE+E  +  Y+VW+ F +   + I +  + AI+   G  +   Y  A     V  + 
Sbjct: 129 RINVEDEKLRGAYKVWSSFLNITTSTIEVATLQAIYTGKGYPIKNNYRDAIQNYNVQPME 188

Query: 175 -DVVGPEGLVYAVEFSHRSGRDLI 197
            D   P+ ++   E ++R+ R LI
Sbjct: 189 VDFYSPDSVIQINEDTNRTTRGLI 212


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,472
Number of Sequences: 52641
Number of extensions: 456128
Number of successful extensions: 1079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 13
length of query: 315
length of database: 24,830,863
effective HSP length: 85
effective length of query: 230
effective length of database: 20,356,378
effective search space: 4681966940
effective search space used: 4681966940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)