Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000073-TA|BGIBMGA000073-PA|IPR004210|BESS motif
         (316 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.55 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   5.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 235 EQLSRKQCPKLKVSPVEVPRMSEMDESLIQVTS 267
           EQ SR++ P  KV P +V    E +E+   V S
Sbjct: 413 EQKSRRKGPAFKVDPTQVESEEEDEETSTTVFS 445


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 73  PKIKTEVIDKPLDLKTKAEVTDRP--DTVDKCNQTVIDKNPSLEIKIDANSILPDD 126
           P +   V    L    +++ + RP  DT    +Q V D+N SLE  ++ NS   DD
Sbjct: 60  PNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQ-VDDQNESLEASVNENSKNGDD 114


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,270
Number of Sequences: 317
Number of extensions: 2483
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 316
length of database: 114,650
effective HSP length: 57
effective length of query: 259
effective length of database: 96,581
effective search space: 25014479
effective search space used: 25014479
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)