Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000073-TA|BGIBMGA000073-PA|IPR004210|BESS motif
(316 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 32 0.71
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 31 1.6
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 31 1.6
SB_18653| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27) 29 3.8
SB_38758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7) 29 6.6
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 29 6.6
SB_2429| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-08) 29 6.6
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 28 8.7
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 155 IEVLKIIRYALQGHKCFEALKVAEDSFFRDRMSG 188
+ +K IRY G AL++A+ SFFR R+SG
Sbjct: 845 VRAIKYIRYPSGGTNLGAALRLAKGSFFRRRISG 878
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 21 PVRSEQQK--ISVPQADVVSIEGATEQPRYSQDKYESFSEVSNSPQ-HAPPEDVIP 73
PV E+ + S + V S+ T +PR S D YE + SP+ H PP P
Sbjct: 682 PVNKERAESVASCSEDQVYSVPSLTPRPRSSSDTYEPVEPKAYSPKPHQPPPRPAP 737
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 21 PVRSEQQK--ISVPQADVVSIEGATEQPRYSQDKYESFSEVSNSPQ-HAPPEDVIP 73
PV E+ + S + V S+ T +PR S D YE + SP+ H PP P
Sbjct: 461 PVNKERAESVASCSEDQVYSVPSLTPRPRSSSDTYEPVEPKAYSPKPHQPPPRPAP 516
>SB_18653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 60 SNSPQHAPPEDVIPKIKTEVIDKPLDLKTKAEVTDRPDTVDKCNQTVIDK 109
S QHA I K ID+P K + D+P T +K + T IDK
Sbjct: 270 STGNQHAHDRHTIEKQHPTTIDEPQTEKQHSTTIDKPQT-EKQHSTTIDK 318
>SB_14492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 73 PKIKTEVIDKPLDLKTKAEVTDRPDTVDKCNQTVIDKNPSLEI 115
PK++ V+DK D + + P+ +D+ N+ + DKN + I
Sbjct: 329 PKLQGVVLDKGKDTEIPLQAALEPELLDRVNKLLHDKNCQVRI 371
>SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)
Length = 488
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 12 LQTRKVSAGPVRSEQQKISVPQADVVSIEGATEQPRYSQDKYESFSEVSNSPQHAPPEDV 71
L R+ P+R + Q I+VP + + Q R ++++ ++ QH P + +
Sbjct: 403 LPPREKQGSPLRVQGQLIAVPSPSPPAAQKNEHQHRIEREEFLQSISPTSQMQHQPGQRL 462
Query: 72 IPKIKTEVIDKPLDLKTKAEVTD 94
+ +V D+P+D + + D
Sbjct: 463 GGDV-VKVTDEPVDGRLSVDSID 484
>SB_38758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 175 KVAEDSFFRDRMSGILAKQEVDVATSKGAETRLSMTTRSADGSXXXXXXXXXXXXSDSDE 234
K+ + S S + A ++ +V T+ + + R S DS E
Sbjct: 110 KIPDISTIHKLTSTLPADEDTEVPTASSTQFNFNRELRRILVSLIDSSILLQSLDEDSQE 169
Query: 235 EQLSRKQCPKLKVSPVEVPRMSEM--DESLIQVTSVAQMSTP 274
++ + P L V P + RMS M E L+Q S + + P
Sbjct: 170 ASTAKPEEPSLTVDPHPINRMSPMLAMEWLLQHESDSDIDEP 211
>SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7)
Length = 172
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 80 IDKPLDLKTKAEVTDRPDTVDKCNQT-----VIDKNPSLE--IKIDANSILPDDHFDDDK 132
ID + ++ T + T D+ N V D P L+ ++ NS L DD F DD
Sbjct: 38 IDNDAPISLASDSTQKDYTKDEFNDEYKGPDVFDLEPKLQPFSNMERNSTLDDDSFHDDA 97
Query: 133 LFMNSLIPLFKKMSDD 148
L N + + DD
Sbjct: 98 LSSNDDVVGYHDNIDD 113
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 69 EDVIPKIKTEVIDKPLDLKTKAEVTD--------RPDTVDKCNQTVIDKNPSLEIKIDAN 120
ED + KIK E+ DL V D D +D C +++ + + + D N
Sbjct: 775 EDALRKIKAELDQLGQDLNNGLPVDDSLDDSLVSHADALDACGESLPSRQNNKPVNPDTN 834
Query: 121 SILPDD 126
++L DD
Sbjct: 835 TVLVDD 840
>SB_2429| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-08)
Length = 377
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 5 PGLVHEDLQTRKVSAGPVRSEQQKISVPQADVVSIEGATEQPRYSQD 51
P +V +DL +R SAG + ++ D+VS + TE+ S+D
Sbjct: 289 PAIVLDDLASRDTSAGRGNMSRDSPAIVLGDLVSRDTYTERGNMSRD 335
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 61 NSPQHAPPEDVIPKIKTEVIDKPLDLKTKAEVTDRP--DTVDKCNQTVIDKNPSLEIKID 118
+ P H+PP + K +DKP D+P +DK +V+DK P L +
Sbjct: 255 DKPPHSPPTLTLDKPPHSALDKP-----PHSALDKPPHSALDKPPHSVLDKPPHLALDKP 309
Query: 119 ANSIL 123
+S L
Sbjct: 310 PHSAL 314
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 240 KQCPKLKVSPVEVPRMSEMDESLIQVTSVAQMSTPLFMKMYNLERSKAAPALSSTNQPMH 299
KQ + SP + + +DES+++ S A+ +F + + S+ +P ++++P+
Sbjct: 1012 KQRVIVTTSPKQSSDVGPVDESVVRSESTAEQEKEVFFEELFKKMSEDSPVKPASSEPLE 1071
Query: 300 V 300
V
Sbjct: 1072 V 1072
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.127 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,609
Number of Sequences: 59808
Number of extensions: 397848
Number of successful extensions: 913
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 13
length of query: 316
length of database: 16,821,457
effective HSP length: 82
effective length of query: 234
effective length of database: 11,917,201
effective search space: 2788625034
effective search space used: 2788625034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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