Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000073-TA|BGIBMGA000073-PA|IPR004210|BESS motif
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 30 0.37
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 30 0.37
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 30 0.50
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 30 0.50
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 29 1.1
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 28 2.0
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 28 2.0
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 2.6
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 27 3.5
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 3.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 3.5
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 26 6.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 8.1
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 30.3 bits (65), Expect = 0.37
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 99 VDKCNQTVIDKNPSLEIKIDANSILPDDHFDDDKLFMNSLIPLFKKMSDDTRLLCRIEVL 158
+ K + + KN S++ ++DA + DD +D L L+ L K+ D L R+E++
Sbjct: 148 IPKATEVLKSKNGSIDYELDAET---DDFLNDSVLGGVVLVGLGGKIRVDNTLRARLEIV 204
Query: 159 K 159
K
Sbjct: 205 K 205
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 30.3 bits (65), Expect = 0.37
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 18 SAGPVRSEQQKISVPQADVVSIEGATEQPRYSQDKYESFSEVSNSPQHAPPEDVIPKIKT 77
S G RS++++ Q + + + E + E E N + A + + +I+T
Sbjct: 235 SWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSKGL--QIET 292
Query: 78 EVIDKPLDLKTKAEVTDRPDTVDKCNQTVIDKNPSLEIKIDANSILPDDHFDDD 131
+ D + EV + + + + SLE+K +AN + DD DDD
Sbjct: 293 QPASH--DGEVDGEVKEEEENKVSSSSNIEASQSSLEVKDEANRKVDDDDEDDD 344
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 29.9 bits (64), Expect = 0.50
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 97 DTVDKCNQTVIDKNPSLEIKIDANSILPDDHFDDDKLFMNSLIPLFKKMSDDTRLL 152
+ VD N V+ K+ SL I + N+++P+ HF + ++ +SL + +++ R+L
Sbjct: 801 ENVDVRN-IVVQKDESLNIDLQNNAVVPELHFKEGMVY-DSLENAYTYLAESKRML 854
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 29.9 bits (64), Expect = 0.50
Identities = 22/110 (20%), Positives = 47/110 (42%)
Query: 9 HEDLQTRKVSAGPVRSEQQKISVPQADVVSIEGATEQPRYSQDKYESFSEVSNSPQHAPP 68
+E+L+ +K ++ P S ++ + + D + A S+++ S + S P
Sbjct: 310 NEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPK 369
Query: 69 EDVIPKIKTEVIDKPLDLKTKAEVTDRPDTVDKCNQTVIDKNPSLEIKID 118
+ + + D+P K ++V+D + +K D +LE K D
Sbjct: 370 DSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSD 419
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 58 EVSNSPQ-HAPPEDVIPKIKTEVIDKPLDLKTKAEVTDRPDTVDKCNQTVIDKNPSL 113
++SN P P V+ K ++ D + KAE +RPD + CN I NP +
Sbjct: 235 DLSNHPYPRKSPWKVVGNAKLALMTYLYDFQKKAEAHERPDKM-PCNLHTIMANPGV 290
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 13 QTRKVSA-GPVRSEQQKISVPQADVVSIEGATEQPRYSQDKYESFSEVSNSP 63
Q + V A G V I V + S +G+ P +S+++ E F E+S +P
Sbjct: 269 QNKSVKASGAVAIRNPYIRVVGIQMDSNDGSKSTPLFSEEEEEEFLEISRTP 320
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 14 TRKVSAGPVRSEQQKISVPQADVVSIEGATEQPRYSQDKY-ESFSEVSNSPQHAPPEDV 71
T VSA S ++ SV + + S + AT S++ + ESFS+ S Q PEDV
Sbjct: 273 TPSVSAST--SRERSTSVAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQTPIPEDV 329
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 247 VSPV-EVPRMSEMDESLIQVTSVAQMSTPLFMKMYNLERSKAAPALS-STNQPMHVSVKT 304
VSP EVP + E D++ + SVAQ + + ++ +E + + N ++
Sbjct: 237 VSPFKEVPSIKEGDDAYYHLRSVAQDAANILQEILKIESTSTTSQIKPKCNYETEITDCM 296
Query: 305 EPLEDAQSQLAS 316
E L+ S+L S
Sbjct: 297 EKLQSNLSELKS 308
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 169 KCFEALKVAEDSFFRDRMSGILAKQEVDVATSKGAET 205
KCF L ED F+ R++ L K+E+ + SK T
Sbjct: 135 KCF--LARLEDEVFQGRLTSSLEKKEIGIVWSKSFST 169
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/57 (29%), Positives = 22/57 (38%)
Query: 49 SQDKYESFSEVSNSPQHAPPEDVIPKIKTEVIDKPLDLKTKAEVTDRPDTVDKCNQT 105
S+ K F + S PPE + KI T+ P K K + DT N T
Sbjct: 68 SEAKSREFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNT 124
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 52 KYESFSEVSNSPQHAPPEDVIPKIKTEVIDKPLDLKTKAEVTD 94
+++ F EVS+ P P V + KT++++ P+ K + D
Sbjct: 283 EHDRFDEVSHMPLRLLPRGVQLEGKTDILEMPIGDAVKKGIVD 325
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 66 APPEDVIPKIKTEVIDKPLDLKTKAEVTDRPDTVDKCNQTVIDKNPSLEI 115
A PE VIP IK + K +DL+ D N+ ++ PSL++
Sbjct: 36 AEPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGG-NEDILSYFPSLKV 84
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 8.1
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 205 TRLSMTTRSADGSXXXXXXXXXXXXSDSDEEQLSRKQCPKLKVSPVEVPRMSEMDESLIQ 264
T ++ TT ++ S S S S VS P S S++
Sbjct: 360 TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSST-AP--SYNTSSVLP 416
Query: 265 VTSVAQMSTPLFMKMYNLERSKAAPALSSTNQPMHVSVKTEPLEDAQSQLAS 316
+SV+ STPL S ++ LSS N S + PL S A+
Sbjct: 417 TSSVS--STPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTAT 466
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.127 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,239
Number of Sequences: 5004
Number of extensions: 52819
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 16
length of query: 316
length of database: 2,362,478
effective HSP length: 73
effective length of query: 243
effective length of database: 1,997,186
effective search space: 485316198
effective search space used: 485316198
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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