Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000072-TA|BGIBMGA000072-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR009091|Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...   183   6e-47
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    57   7e-09
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    47   7e-06
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    28   3.5  

>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score =  183 bits (445), Expect = 6e-47
 Identities = 143/428 (33%), Positives = 217/428 (50%), Gaps = 58/428 (13%)

Query: 35  EIPTAPKKRGRVLTCGQGDVGQLGLGE---DVVETTKFKYVTALGDKI--VDVQAGGMHT 89
           +IP  P +R  V   G G + +LG+GE   DVV   +   + +  DK+  VD+  GGMH+
Sbjct: 62  KIPELPTERLNVYVFGSGSMNELGMGEEEMDVVYRPRLNPILST-DKVGVVDLAVGGMHS 120

Query: 90  IALDSSGKIWTFGCNDEGALGRATSNEKDE-----------GTPKQXXXXXXXXXXXX-- 136
            AL   G+++T+G ND+ ALGR T ++KDE           GTP +              
Sbjct: 121 AALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVI 180

Query: 137 -GDSHSAALLQNGDVYAWGSFRDSHGSMGLVVRGREGKPCKEPVKIDIGEPAVEIASGGD 195
             D+ +AA+  NG  + WG+FR S G +G        K   EP ++ + E   ++A+G D
Sbjct: 181 CSDNLTAAITDNGCCFTWGTFRCSDGVLGY---SDSQKRTAEPTQMRLPE-ICQLATGTD 236

Query: 196 HLVVLTTSGGVFTLGCGEQGQLGRLAQRSASRDARQGFSALLVPARVTLRQAAARVWAGH 255
           H++ LTT+G V+T G G+Q QLGR   R   R   QG    L P  + L+   + V AG 
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQLGR---RMLERRRLQG----LTPQPLALKNIIS-VGAGS 288

Query: 256 HATFVLDAQHARLFAFGLNNYGQLGI--TGEKRKTALFSPTECDALRAVGDDHAWSAVAL 313
           + +F +D    R++A+GLN   Q GI    E+    +  PT  DAL    + +   ++  
Sbjct: 289 YHSFAID-NKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDAL----EGYNVKSITG 343

Query: 314 GQHHTLTLAANGQIYALGRCEYGRLGL----------GDKSGD---AETLELIPKLQNKK 360
           G+HHTL L  +G++ A GR +  +LG+           D+ G+     T  +IP L N  
Sbjct: 344 GEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTN-- 401

Query: 361 CISIAAGTSNSFAVTDSGEVYSWGMGSEGKLGTGES-EDLNEPTLA---AVDSRAPLRVS 416
            I +  GT ++ AVT  G+VYSWG     ++G G++ ED+  PTL    A+   A     
Sbjct: 402 VIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAIRVAG 461

Query: 417 AGGQHTVL 424
           AGGQ +++
Sbjct: 462 AGGQFSII 469


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 10/194 (5%)

Query: 239 PARVTLRQAAARVWAGHHATFVLDAQHARLFAFGLNNYGQLGITGEKRKTALFSPTECDA 298
           P  V   +A  ++  G + T +LD + ++L+A G N  GQ G    + K  L++P   D 
Sbjct: 24  PQIVPFDRAIEKISCGGNHTLLLD-EDSQLWACGDNRKGQCGY---EVKEPLYNPLSPDY 79

Query: 299 LRAVG--DDHAWSAVALGQHHTLTLAANGQ-IYALGRCEYGRLGLGDKSGDAETLEL-IP 354
           LR         W  +  G   ++ + A+ + + + G    G LG G++S      E+ IP
Sbjct: 80  LRIFTRVSHERWVFLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIP 139

Query: 355 KLQNKK-CISIAAGTSNSFAVTDSGEVYSWGMGSEGKLGTGESEDLNEPTLAAVDSRAPL 413
            L +K+  I I+AG  +   VT+ G +Y  G G +G+LG    + +N+ +       A  
Sbjct: 140 YLDDKEFIIDISAGLRHWICVTNEGNLYGCGDGRKGQLGPVVMKTVNKVSFLGRIEHAQ- 198

Query: 414 RVSAGGQHTVLLVE 427
            V  G Q + +L E
Sbjct: 199 AVVCGVQFSAVLQE 212



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 44/250 (17%)

Query: 181 IDIGEPAVEIASGGDHLVVLTTSGGVFTLGCGEQGQLGRLAQRSASRDARQGFSALLVPA 240
           +D  E  ++I++G  H + +T  G ++  G G +GQLG +  ++ ++ +  G        
Sbjct: 141 LDDKEFIIDISAGLRHWICVTNEGNLYGCGDGRKGQLGPVVMKTVNKVSFLG-------- 192

Query: 241 RVTLRQAAARVWAGHHATFVLDAQHARLFAFGLNNYGQLGITGEKRKTALFSPTECDALR 300
           R+   QA   V  G   + VL  +   +   G          GEK   A     ECDA +
Sbjct: 193 RIEHAQA---VVCGVQFSAVLQ-ETGHVIVLG----------GEKWNVA----AECDAWQ 234

Query: 301 AVGDDHAWSAVALGQH-HTLTL-AANGQIYALGRCEYGRLGLGDKSGDAETLELIPKLQN 358
           A   + + S  ++  +  TL+L +  G +YA GRC        D++  A T       + 
Sbjct: 235 ANNSELSSSICSISANWSTLSLLSTEGCVYAFGRC--------DRAQKAHT-------KA 279

Query: 359 KKCISIAAGTSNSFAVTDSGEVYSWGMGSEGKLGTGESEDLNEPTLAAVDSRAPLRVSAG 418
              + IA+GT ++   T  G V  +G    G     +  D+ +     +   A + V+AG
Sbjct: 280 SDIVQIASGTEHNILRTKKGSVLIYGWNEHGNASNDDKRDVYDAKTLQLPGWAYI-VAAG 338

Query: 419 GQHTVLLVEE 428
              + +++EE
Sbjct: 339 YATSWIVIEE 348



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 43  RGRVLTCGQGDVGQLGLG-EDVVETTKFKYVTALGDK--IVDVQAGGMHTIALDSSGKIW 99
           R RV +CG+G  G+LG G     +  +   +  L DK  I+D+ AG  H I + + G ++
Sbjct: 108 RRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWICVTNEGNLY 167

Query: 100 TFGCNDEGALG 110
             G   +G LG
Sbjct: 168 GCGDGRKGQLG 178



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 46  VLTCGQGDVGQLGLGEDVVETTKFKYVTALGDKIVDVQAGGMHTIALDSSGKIWTFGCND 105
           +L+ G     QLGL  D  E      +      I  +  GG HT+ LD   ++W  G N 
Sbjct: 2   LLSLGSNGNFQLGLNND--EDVYSPQIVPFDRAIEKISCGGNHTLLLDEDSQLWACGDNR 59

Query: 106 EGALG 110
           +G  G
Sbjct: 60  KGQCG 64



 Score = 35.1 bits (77), Expect = 0.023
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 385 MGSEG--KLGTGESEDLNEPTLAAVDSRAPLRVSAGGQHTVLLVEET 429
           +GS G  +LG    ED+  P +   D RA  ++S GG HT+LL E++
Sbjct: 5   LGSNGNFQLGLNNDEDVYSPQIVPFD-RAIEKISCGGNHTLLLDEDS 50



 Score = 29.9 bits (64), Expect = 0.87
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 189 EIASGGDHLVVLTTSGGVFTLGCGEQGQLGRLAQRSASRDARQGFSALLVPARVTLRQAA 248
           +I+ GG+H ++L     ++  G   +GQ G   +          +  L +  RV+  +  
Sbjct: 35  KISCGGNHTLLLDEDSQLWACGDNRKGQCGYEVKEPLYNPLSPDY--LRIFTRVS-HERW 91

Query: 249 ARVWAGHHATFVLDAQHARLFAFGLNNYGQLGITGEKRKTALFSPTECDALRAVGDDHAW 308
             +  G   + ++ A   R+ + G    G+LG         L    E D +  + D    
Sbjct: 92  VFLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGL---REID-IPYLDDKEFI 147

Query: 309 SAVALGQHHTLTLAANGQIYALGRCEYGRLG 339
             ++ G  H + +   G +Y  G    G+LG
Sbjct: 148 IDISAGLRHWICVTNEGNLYGCGDGRKGQLG 178


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 46  VLTCGQGDVGQLGLGEDVVETTKFKYVTALGDKIVDVQAGGMHTIALDSSGKIWTFGCND 105
           V  CG G  G++G   DV     F  +  +  K++ +     H++AL   G I+++G N 
Sbjct: 218 VYVCGIGAGGRIGFNTDV--QYNFIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNG 275

Query: 106 EGALGRATSN-EKDEG---TPKQXXX--XXXXXXXXXGDSHSAALLQNGDVYAWGSFRDS 159
            G LG +    +KD+    TP++              G S+S A     D+Y+WG    +
Sbjct: 276 SGELGLSNDELKKDDPIQITPRRISAFKDYQIIGMAAGKSYSVAWTDT-DIYSWGL---N 331

Query: 160 HGSMGL 165
           +G +G+
Sbjct: 332 NGQLGI 337



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 268 LFAFGLNNYGQLGITGEKRKTA------LFSPTECDALRAVGDDHAWSAVALGQHHTLTL 321
           L+ FG N    LGI   K  ++      L + TE      +        V   + H++ L
Sbjct: 151 LYGFGTNVNNTLGIANGKEPSSPERVFLLKNQTESPTSGQLFSRDKILDVQASKFHSVVL 210

Query: 322 A--ANGQIYALGRCEYGRLGLGDKSGDAETLEL-IPKLQNKKCISIAAGTSNSFAVTDSG 378
               +  +Y  G    GR+G      D +   + IP + +K  I I+   ++S A+T  G
Sbjct: 211 TDEPSQNVYVCGIGAGGRIGFNT---DVQYNFIPIPGIIHK-VIQISVSHTHSLALTKFG 266

Query: 379 EVYSWGMGSEGKLGTGESE 397
            +YSWG    G+LG    E
Sbjct: 267 SIYSWGKNGSGELGLSNDE 285



 Score = 35.5 bits (78), Expect = 0.017
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 77  DKIVDVQAGGMHTIAL--DSSGKIWTFGCNDEGALGRATSNEKDEGTPKQXXXXXXXXXX 134
           DKI+DVQA   H++ L  + S  ++  G    G +G  T  + +   P            
Sbjct: 195 DKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQYN-FIPIP-GIIHKVIQI 252

Query: 135 XXGDSHSAALLQNGDVYAWGSFRDSHGSMGL 165
               +HS AL + G +Y+WG  ++  G +GL
Sbjct: 253 SVSHTHSLALTKFGSIYSWG--KNGSGELGL 281


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 72  VTALGDKIVDVQAGGMHTIALDSSGK 97
           +  LGDK+VD++A   HT    SS +
Sbjct: 323 IAKLGDKVVDLEAASSHTPVQSSSSE 348


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,649
Number of Sequences: 5004
Number of extensions: 75267
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 13
length of query: 506
length of database: 2,362,478
effective HSP length: 76
effective length of query: 430
effective length of database: 1,982,174
effective search space: 852334820
effective search space used: 852334820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)