GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000071-TA|BGIBMGA000071-PA|undefined
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   7.9  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   7.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   7.9  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    24   7.9  

>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 89  HFWAPNIDHVLYTCGTKNGITSEQYINISYY 119
           HFWAP +   L   G  +   S +Y++I  Y
Sbjct: 20  HFWAPAMKWTLVLSGIGDYARSPEYLSIRQY 50


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 8   ILATQNRASSFKFNASFGQDSQFTVP 33
           +L T    +S KF+  FG   QFT+P
Sbjct: 640 LLVTSATMNSQKFSDFFGGAPQFTIP 665


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 97  HVLYTCGTKNGITS 110
           H + +CG KNGITS
Sbjct: 798 HPVVSCGGKNGITS 811


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 30   FTVPITLVHGFCANVTLVPGQLA 52
            F +P+TL +G  A V ++PG  +
Sbjct: 1130 FQIPLTLENGSSAMVEILPGSFS 1152


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 34  ITLVHGFCANVTLVPGQL 51
           +T + GFC+ +T  PG+L
Sbjct: 436 MTSIDGFCSVITFEPGEL 453


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,194
Number of Sequences: 5004
Number of extensions: 25300
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)