GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000071-TA|BGIBMGA000071-PA|undefined
         (144 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56361| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                  28   2.6  
SB_9226| Best HMM Match : APOBEC_C (HMM E-Value=4.5)                   28   2.6  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.5  
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)                   27   6.0  
SB_40000| Best HMM Match : Pox_A32 (HMM E-Value=0.053)                 27   7.9  
SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15)                   27   7.9  
SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9)                   27   7.9  

>SB_56361| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 274

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 49  GQLARAELTVDITTVGIQITYEAYLSGVVALAYDRPHNGHHFWAPNIDHVLYTC 102
           G++ R  LT +         Y  Y  G  +L    P + H  W  ++ HV+Y C
Sbjct: 10  GRIRRFNLTCNTLAESAPQGYRIYRDG--SLLVTSPLSTHLVWLTSLGHVVYEC 61


>SB_9226| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
          Length = 262

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 49  GQLARAELTVDITTVGIQITYEAYLSGVVALAYDRPHNGHHFWAPNIDHVLYTC 102
           G++ R  LT +         Y  Y  G  +L    P + H  W  ++ HV+Y C
Sbjct: 10  GRIRRFNLTCNTLAESAPQGYRIYRDG--SLLVTSPLSTHLVWLTSLGHVVYEC 61


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 72  YLSGVVALAYDRPHNGHHFWAPNIDHVLYTCGTKNGITSEQYINISYYDNANLVFLDLNS 131
           YLS         P  G   +A N+D V++ C  +N         + Y DN   +++ +  
Sbjct: 529 YLSNTTLQDCYTPAMGGMLFANNVDIVIHDCVFQNNSAKGGPGGVCYLDNLKTLYITITD 588

Query: 132 GI 133
            I
Sbjct: 589 SI 590


>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
          Length = 1130

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 57  TVDITTVGIQITYEAYLSGVVALAYDRPHNGHHFWAPNIDHVLYTCGTKNGITSEQY 113
           TV++T +   +  E   S +V +           WAP    V++TC  K      QY
Sbjct: 683 TVNVTLIASNLAMEVDTSFLVEVEDPVTMTSSMDWAPVNTSVVFTCALKGNFDLTQY 739


>SB_40000| Best HMM Match : Pox_A32 (HMM E-Value=0.053)
          Length = 946

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 11 TQNRASSFKFNASFGQDSQFTVPITLVHGFCANVTLVPGQLARAELTVDITTVGIQITY- 69
          T +R +     AS G+     VP TL  G    VTLVPG L   E   D     +  TY 
Sbjct: 24 TVHRVTLNPSTASPGETLYVAVP-TLSEG----VTLVPGSLWGGETPQDTNRYDVFKTYE 78

Query: 70 EAYLSGV 76
          E YLS V
Sbjct: 79 ELYLSKV 85


>SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15)
          Length = 481

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 91  WAPNIDHVLYTCG 103
           W+P+ DH+LYT G
Sbjct: 18  WSPDSDHILYTSG 30


>SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9)
          Length = 402

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 51  LARAELTVDITTVGIQITYEAYLSGVVALAYD-RPHNGHHFWAPNID 96
           LA   + +   TV I +T    ++ VV  A + RP+ GHH +    D
Sbjct: 351 LAITAVAITAVTVAIVVTLAVTVAIVVIAAVEVRPNGGHHLFITRKD 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,616,439
Number of Sequences: 59808
Number of extensions: 166859
Number of successful extensions: 298
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 16,821,457
effective HSP length: 76
effective length of query: 68
effective length of database: 12,276,049
effective search space: 834771332
effective search space used: 834771332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)