GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000071-TA|BGIBMGA000071-PA|undefined
         (144 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    33   0.10 
AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...    33   0.10 
AF067220-8|AAC16981.1|  135|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    28   2.3  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    28   2.3  
AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z11126-1|CAA77470.1|  292|Caenorhabditis elegans Hypothetical pr...    27   3.9  

>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase
          protein 1, isoform b protein.
          Length = 328

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 5  KNIILATQNRASSFKFNASFGQD-SQFTVPITLVHGFCANVTLVPGQLARAELTV 58
          K +  A  N+A  FK     G+  +Q  VP+TL   F A VT +   +AR E T+
Sbjct: 30 KKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEFSAYVTQLDNSIARVESTL 84


>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 5   KNIILATQNRASSFKFNASFGQD-SQFTVPITLVHGFCANVTLVPGQLARAELTV 58
           K +  A  N+A  FK     G+  +Q  VP+TL   F A VT +   +AR E T+
Sbjct: 203 KKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEFSAYVTQLDNSIARVESTL 257


>AF067220-8|AAC16981.1|  135|Caenorhabditis elegans Hypothetical
           protein C33E10.10 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 89  HFWAPNIDHVLYTCGTKN 106
           +FW   +++ LYTCGTK+
Sbjct: 109 YFWPTLLNYALYTCGTKD 126


>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 17/91 (18%)

Query: 24  FGQDSQFTVPITLVHGFCANVTLVPGQLARAELTVDITTVGIQITYEAYLSGVVALAYDR 83
           F Q+ Q  +P  L+H  CA +     Q+ R+          + IT + ++  + +LAY+R
Sbjct: 744 FTQELQAFIPSQLLHLLCAAINNCE-QVRRS----------LNITEKLHMDDM-SLAYER 791

Query: 84  PH---NGHHFWAPNIDHVLYTCGTKNGITSE 111
                NG+H W   I++ L +C  ++ I SE
Sbjct: 792 DASRLNGNHMWKSEIENRLESC--ESNICSE 820


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 17/91 (18%)

Query: 24  FGQDSQFTVPITLVHGFCANVTLVPGQLARAELTVDITTVGIQITYEAYLSGVVALAYDR 83
           F Q+ Q  +P  L+H  CA +     Q+ R+          + IT + ++  + +LAY+R
Sbjct: 728 FTQELQAFIPSQLLHLLCAAINNCE-QVRRS----------LNITEKLHMDDM-SLAYER 775

Query: 84  PH---NGHHFWAPNIDHVLYTCGTKNGITSE 111
                NG+H W   I++ L +C  ++ I SE
Sbjct: 776 DASRLNGNHMWKSEIENRLESC--ESNICSE 804


>AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical
           protein C30F12.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 1   MIWDKNIIL-ATQNRASSFKFNASFGQDSQFTVPITLVHGFCANVTLVPG 49
           M++D+ +++ AT NRA S  +     Q  QF   IT++   CA++ L  G
Sbjct: 188 MLFDRGLVMVATSNRAPSELYKNGL-QRHQFMPFITILEDKCASLALDSG 236


>Z11126-1|CAA77470.1|  292|Caenorhabditis elegans Hypothetical
          protein ZK643.1 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 6  NIILATQNRASSFKFNASFGQDSQFTVPITLVHGFCANV 44
          NI+LA     +   FNA    DS  + P T+VH FCA +
Sbjct: 7  NIVLAEPRCMAGEFFNAKVLLDS--SDPDTVVHSFCAEI 43


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,480
Number of Sequences: 27539
Number of extensions: 134257
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 12,573,161
effective HSP length: 75
effective length of query: 69
effective length of database: 10,507,736
effective search space: 725033784
effective search space used: 725033784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)