GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000071-TA|BGIBMGA000071-PA|undefined
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.73 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   6.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 84  PHNGHHFWAPNIDHVLYTCGTKNGITSEQYINISYYDNA 122
           PH+ HH    ++ H+ Y        +   Y+N  Y   A
Sbjct: 350 PHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGA 388


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 96  DHVLYTCGTKNGITSEQYINISYYDNANLVFLDLNSG 132
           D  LY   T +G      I  S  D  N++FLDL++G
Sbjct: 791 DIALYPSQTTHGYD----IYASSIDKENILFLDLSTG 823


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 96  DHVLYTCGTKNGITSEQYINISYYDNANLVFLD 128
           + +L   G K G+     + +S +D++N+V +D
Sbjct: 600 ERLLLPKGKKEGMPYNVLVVVSPFDDSNVVQID 632


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 91  WAPNIDHVLYTCGTKNG 107
           W  N  +  +TC TKNG
Sbjct: 14  WELNATNSPHTCRTKNG 30


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 97  HVLYTCGTKNGITSEQYINISYY 119
           H+L   G K G   E ++ +S Y
Sbjct: 586 HMLIPKGNKEGFAMELFVMVSDY 608


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 30 FTVPITLVHGFCANVTLV 47
          F + I +VH  CA+V  V
Sbjct: 7  FAILIAIVHASCASVPKV 24


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 38 HGFCANVTLVPGQLARAELTVDITTVGIQITYEAY 72
          + + +N+T V  QL + E  VD+T    + + +A+
Sbjct: 16 NNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAH 50


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,619
Number of Sequences: 429
Number of extensions: 1647
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)