Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000070-TA|BGIBMGA000070-PA|undefined
         (267 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.74 
SB_45741| Best HMM Match : DSPc (HMM E-Value=1.2e-05)                  30   2.3  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        29   3.0  
SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)                 28   9.2  

>SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 218 INTVMAASRLKPTVKVMEEITIEYYSDAKIIITDQNTSDVLNTYSVNFLY 267
           IN+ M  S   PT   +E+IT  Y +D  +I T  N+S V + + +N +Y
Sbjct: 566 INSDMEVSVTNPTTSSLEQITSFYKNDLNVIKT--NSSSVFDGHFLNEVY 613


>SB_45741| Best HMM Match : DSPc (HMM E-Value=1.2e-05)
          Length = 246

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 131 ITYDIKLDDFPRILFIANYNQNAKKY--EVVKIDANINVHLEPNQHIKAE 178
           ITY +++   P  L+I  Y Q+  K   + +K+ A++NV +E ++ + A+
Sbjct: 116 ITYPVEV--LPSFLYIGTYKQSQNKAITKDLKVKAHVNVTMEADKELSAD 163


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 228 KPTVKVMEEITIEYYSDAKII-ITDQNTSDVL 258
           KPTVK +E  TIEY+++A I  + ++N S +L
Sbjct: 300 KPTVKGIEWTTIEYFNNAVICELIEKNHSGIL 331


>SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)
          Length = 212

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/99 (16%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 150 NQNAKKYEVVKIDANINVHLEPNQHIKAELAANITTI-EVIIDYEAHLTGLTAVNYVRKY 208
           N N +   + ++  N+NVH+     ++  +  +I+ I E+ ++   H++ ++ +     +
Sbjct: 19  NVNVRISNISELRVNVNVHISNISELRVNVNVHISNISEIRVNVNVHISNISELRVNVNF 78

Query: 209 DNHHFWGLDINTVMAASRLKPTVKVMEEITIEYYSDAKI 247
              +   L +N  +  S +   ++V   + I   S+ ++
Sbjct: 79  RISNISELRVNVNVRISNIS-ELRVNMNVHISNISELRV 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,337,561
Number of Sequences: 59808
Number of extensions: 323991
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 6
length of query: 267
length of database: 16,821,457
effective HSP length: 81
effective length of query: 186
effective length of database: 11,977,009
effective search space: 2227723674
effective search space used: 2227723674
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)