Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000070-TA|BGIBMGA000070-PA|undefined
         (267 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17900.1 68416.m02280 expressed protein                             29   3.3  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    29   3.3  
At5g43940.1 68418.m05376 alcohol dehydrogenase class III / gluta...    29   4.3  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    27   9.9  
At2g38780.1 68415.m04761 expressed protein                             27   9.9  
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ...    27   9.9  

>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 7   QIQISGCNSDVISDTETLT-FNLTDANLKNAVEKLFGRKPDDVFLKSPTPWGD 58
           QIQI  C S+   DTE +T F + +   +    K+  ++  D+   + TP GD
Sbjct: 128 QIQILACLSESKGDTEIITPFKVAEVMSRTGQRKVSDKQNGDMSDGASTPSGD 180


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 94  YNNQGNSTVFSVKIEDKIENYVASKWTKAQELTVNDY--ITYDIKLDDFPRILFIANYNQ 151
           Y N   S +  V + D+        W K    + ND+  +  ++K   +    F+   N 
Sbjct: 552 YGNSFESFLVGVVVPDR---KAIEDWAKLNYQSPNDFESLCQNLKAQKY----FLDELNS 604

Query: 152 NAKKYEVVKIDANINVHLEPN 172
            AK+Y++   +    +HLEPN
Sbjct: 605 TAKQYQLKGFEMLKAIHLEPN 625


>At5g43940.1 68418.m05376 alcohol dehydrogenase class III /
           glutathione-dependent formaldehyde dehydrogenase /
           GSH-FDH (ADHIII) identical to gi:1143388
          Length = 379

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 152 NAKKYEVVKIDANINVHLEPNQHIKAELAANITTIEVIIDYEAHLTGLTAVNYVRKYDNH 211
           ++KKYE  K    +N  + P  H K      +   +  +DY     G  +V        H
Sbjct: 228 DSKKYETAK-KFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCH 286

Query: 212 HFWGLDINTVMAASRLKPTVKVMEEIT 238
             WG  +   +AAS  + + +  + +T
Sbjct: 287 KGWGTSVIVGVAASGQEISTRPFQLVT 313


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 137 LDDFPRILFIANYN---QNAKKYEVVKIDANINVHLEPNQHIKAELAANITTIE 187
           + DFPRIL    Y    Q+ KK+EVV +   + +   P   I +++  N+  +E
Sbjct: 685 IPDFPRILIDGPYGAPAQDYKKFEVVLL-VGLGIGATPMISIVSDIINNLKGVE 737


>At2g38780.1 68415.m04761 expressed protein
          Length = 435

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 96  NQGNSTVFSVKIEDKIENYVASKWTKAQELTVNDYITYDIKLDDFPRILFI 146
           N G    F   +EDK  NY A +  + +E+ +N+ + Y I L     ++FI
Sbjct: 377 NTGYQDYFEAFVEDKT-NYKAQEEKEGEEMGINETLLYVILLASPILMVFI 426


>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
           NAD(+) ADP-ribosyltransferase, putative /
           poly[ADP-ribose] synthetase, putative similar to
           poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
           contains Pfam profiles PF00644: Poly(ADP-ribose)
           polymerase catalytic domain, PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region, PF02877:
           Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
           BRCA1 C Terminus (BRCT) domain
          Length = 983

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 43  RKPDDVFLKSPTPWGDLYETYSWEEVERHFRPQRAIKNIIKNKMVVLSQQFYNNQGNSTV 102
           + P  + L S    G+++E    + +++  R + + K +   K V    +F   +G+ TV
Sbjct: 884 KNPVGLMLLSEVALGEIHELTKAKYMDKPPRGKHSTKGL--GKKVPQDSEFAKWRGDVTV 941

Query: 103 FSVKIEDKIENYVASKWTKAQELTVNDYITYD 134
              K        V+SK  KA EL  N+YI YD
Sbjct: 942 PCGKP-------VSSK-VKASELMYNEYIVYD 965


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,925,410
Number of Sequences: 28952
Number of extensions: 235245
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 7
length of query: 267
length of database: 12,070,560
effective HSP length: 80
effective length of query: 187
effective length of database: 9,754,400
effective search space: 1824072800
effective search space used: 1824072800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)