Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000070-TA|BGIBMGA000070-PA|undefined
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 31 0.23
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.6
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 27 3.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 6.5
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 26 6.5
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 6.5
SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz... 26 6.5
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.5
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.6
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 30.7 bits (66), Expect = 0.23
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 156 YEVVKIDANINVHLEPNQHIKAELAANITTIEVI---IDYEAHLTGLTAVN---YVRKYD 209
YEV A++ ++PN + +E A+ TT+ ++ ID L G + YV ++
Sbjct: 529 YEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFA 588
Query: 210 NHHFWGLDINTVMAASRLKPTVKVMEEITIEYYSDAKIIITDQNTSDVL 258
W +D N + +V +E Y+DA+ I DQ D L
Sbjct: 589 FSCIWEMDENANIIKVHFTKSVIASKEAF--SYADAQARIDDQKMQDPL 635
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 99 NSTVFSVKIEDKIENYVASKWTKAQELTVNDYITYDIKLDDFPRILFIANYNQNAKKYE- 157
N VF + IEN + KW + +N+ + + D + F+A+ + ++E
Sbjct: 131 NEWVFDMLASFSIENSLRIKWVAPDKAKLNETWKCYLHIQDVKKSYFLASLTSRSLQFEG 190
Query: 158 -VVKIDANINVHLEPNQHI-KAELAANITTIEVIIDY 192
V + I H E I L ++ + ++ +Y
Sbjct: 191 GSVGLSNRIITHRELEMVILSTSLCVQLSLLNLLPNY 227
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 19 SDTETLTFNLTDANLKNAVEKLFGRKPDDVFLKSPTPWGDLYETYSWEEVERHFRPQR 76
+D L + ANLK + L G + +KS DL T S++ R F P++
Sbjct: 208 ADNNNLVYCYDIANLKTPLSVLSGHQLAVRSIKSSNSAHDLLATASYDMTSRIFDPEQ 265
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 195 HLTGLTAVNYVRK-YDNHHFWGLDINTVMAASRLKPTVKV 233
H L + YV+ YD H ++ + + +M S + P VKV
Sbjct: 689 HSFALASFPYVKSHYDAHKYFPIVFDVLMNISNMAPHVKV 728
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 92 QFYNNQGNSTVFSVKIEDKIENYVASKWTKAQELTV-------NDYITYDIKLDDFPRIL 144
Q Y++ G+ + + N++AS W K +L+V ++ DI P +L
Sbjct: 221 QLYSDAGSHADYVMTNSSWTRNHIASLWGKDIQLSVVFPPCNTSELEKIDINRKREPTLL 280
Query: 145 FIANYNQNAKKYEVVKIDANINVHLEPNQHIKAELAANI 183
++A Y K +E V + P+ K L ++
Sbjct: 281 YLAQYRPE-KNHENVLRSFALYFEQHPDSPAKLLLVGSV 318
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 3 KSDNQIQISGCNSDVISDTETLTFNLTDANLKNAVEKLFGRKPDDVFLKSPTPWGDLYET 62
+SD + C SD + + D N +AV+ K FL S + W DL +
Sbjct: 49 RSDTIQLVISCPPVTYSDEIQVPWKAIDLNKDDAVKSTIKCKQCQSFLTSISSWKDL-PS 107
Query: 63 YSWEEV 68
+W E+
Sbjct: 108 ANWMEM 113
>SPCC550.06c |hsp10||mitochondrial heat shock protein
Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/40 (20%), Positives = 24/40 (60%)
Query: 72 FRPQRAIKNIIKNKMVVLSQQFYNNQGNSTVFSVKIEDKI 111
F P+++++ + + +++ + + YN +G SV + D++
Sbjct: 34 FLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSVAVGDRV 73
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 150 NQNAKKYEVVKIDANINVHLEPNQHIKAELAANITTIE 187
NQ KK EV K++ + EPN ++ + A++ ++E
Sbjct: 118 NQKDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVE 155
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 63 YSWEEVERHFRPQRAIKNIIKNKMVVLSQQFYNNQGNSTVFSVKIEDKIENYVASK 118
Y+ +E P + I N+ + S N NSTV I D++E V S+
Sbjct: 509 YNKSHIELPLLPTDILSKSIDNQTIYSSLYSSLNSSNSTVSFSGIFDRVEKSVISE 564
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,608
Number of Sequences: 5004
Number of extensions: 52571
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 9
length of query: 267
length of database: 2,362,478
effective HSP length: 72
effective length of query: 195
effective length of database: 2,002,190
effective search space: 390427050
effective search space used: 390427050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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