GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000070-TA|BGIBMGA000070-PA|undefined
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0011 - 13716864-13716968,13717102-13717153,13717588-137177...    29   2.9  
10_08_0474 - 18173154-18173255,18173861-18173961,18174118-181741...    29   3.9  
01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719...    29   3.9  
12_01_0338 - 2594680-2594796,2595079-2595147,2595233-2595338,259...    29   5.1  
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988...    28   6.8  
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    28   9.0  

>03_03_0011 -
           13716864-13716968,13717102-13717153,13717588-13717719,
           13718289-13718491,13718584-13718695,13719308-13719474,
           13720059-13720119,13720527-13720645,13720911-13720943
          Length = 327

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 57  GDLYETYSWEEVERHFRPQRAIKNIIKNKMVVLSQQFYNNQGNSTVFSVKIED 109
           G L  +YS E   R  R QRA++  +  K+  L Q+     G+S+ F+ +I D
Sbjct: 262 GLLPGSYSIEANRRRERGQRALEQRLAEKLAALEQRCAVLSGDSSKFAERIVD 314


>10_08_0474 -
           18173154-18173255,18173861-18173961,18174118-18174170,
           18174291-18174364,18174628-18174692,18174916-18174982,
           18175295-18175387,18176696-18176794,18176877-18176921,
           18177055-18177178,18177304-18177363,18178982-18179061,
           18179347-18179349
          Length = 321

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 215 GLDINTVMAASRLKPTVKVMEEITIEYYSDAKIIITDQNTSDVLN 259
           GLDI T++   R +   K+ +EI  E + +    + ++N S  LN
Sbjct: 191 GLDIGTLIEVRRSQLAYKLSDEIASEMFREHAKKLVEENISTALN 235


>01_06_1214 +
           35470688-35471340,35471617-35471701,35471750-35471906,
           35472086-35472189
          Length = 332

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 113 NYVASKWTKAQELTVNDYITYDIKLDDFPRILFIANYNQNAKKYEVVKIDANI 165
           N  A  W   QEL     + ++ K    PR++ +  +  N  +++ VK+D NI
Sbjct: 217 NRAADNWKFLQELEKAAKVYWNSKDRLPPRVIEVVGHMLNLIEFQTVKVDMNI 269


>12_01_0338 -
           2594680-2594796,2595079-2595147,2595233-2595338,
           2596099-2596154,2596356-2596415,2596544-2596622,
           2596870-2596964,2597085-2597198,2597642-2597693,
           2598870-2599015
          Length = 297

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 121 KAQELTVN-DYITYDIKLDDFPR--ILFIANYNQNAKKYEVVKIDANINVHLE 170
           KA E  V+ D +T+ I  DD P+  +L+I   ++     E+VKI  ++NV +E
Sbjct: 177 KAPEKKVDVDVVTHVIVEDDGPKRSMLYIETADRPGLLLEIVKIITDVNVDVE 229


>04_04_0260 +
           23996775-23996865,23997031-23997566,23998407-23998892,
           23998989-23999152,23999220-23999281,23999753-23999907,
           24000625-24000738,24001701-24002233,24002512-24002609,
           24003108-24003398,24003764-24003830,24003905-24003983
          Length = 891

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 81  IIKNKMVVLSQQFYNN--QGNSTVFSVKIEDKIENYVASKWTKAQEL 125
           I+K+   V S+ + NN  +G + +     +++I+N+ +S WT A+ L
Sbjct: 207 ILKDGFKVCSKCYANNDNKGEANIHPGDKKERIDNHSSSAWTDAETL 253


>10_08_0472 -
           18154797-18155048,18155332-18156318,18156424-18156546,
           18156654-18156808,18157611-18157824,18158977-18159077,
           18159162-18159285,18159584-18159655,18159897-18159961,
           18160167-18160233,18160917-18161015,18161099-18161167,
           18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 215 GLDINTVMAASRLKPTVKVMEEITIEYYSDAKIIITDQNTSDVLN 259
           GLDI T++   R +   K+ +EI  E + +    +  +N S  L+
Sbjct: 315 GLDIGTLIEVRRAQLAYKLSDEIAAEMFKEHAKKLVQENISSALD 359


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,742,254
Number of Sequences: 37544
Number of extensions: 254415
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 6
length of query: 267
length of database: 14,793,348
effective HSP length: 81
effective length of query: 186
effective length of database: 11,752,284
effective search space: 2185924824
effective search space used: 2185924824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)