GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000070-TA|BGIBMGA000070-PA|undefined
         (267 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U21321-2|AAG00050.1|  489|Caenorhabditis elegans Cytochrome p450...    29   4.6  
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    28   6.0  
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 17  VISDTETLTFNLTDANLKNAVEKLFGRKPDDVFLKSP 53
           +  D     F  T+A LK AV KLF    DD+F   P
Sbjct: 550 IAKDLNKTYFTKTEAILKQAVTKLFKALQDDIFKCRP 586


>U21321-2|AAG00050.1|  489|Caenorhabditis elegans Cytochrome p450
           family protein 44A1 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 202 VNYVRKYDNHHFWGLDINTVMAASRLKPTVKVMEEITIEY 241
           + + RKY  H F   D+ TV+AA    P +  ++E T +Y
Sbjct: 81  LGFGRKYVVHIFDPADVQTVLAADGKTPFIVPLQETTQKY 120


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 62  TYSWEEVERHFRPQRAIKNIIKNKMVVLSQQFYNNQGNSTVF 103
           +Y W+ V R    Q   K+I+  K   L ++ + N+G S +F
Sbjct: 232 SYPWDTVRRRMMMQSGRKDILYKKHPRLRKEDHPNEGMSAMF 273


>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical protein
            K02A2.3 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 128  NDYITY-DIKLDDFPRILFIANYNQNAKKYEVVKIDA 163
            N Y+TY D+  +D PR+LFI    +     EV+ ID+
Sbjct: 989  NSYMTYLDVLTEDLPRVLFIGGSGR-----EVITIDS 1020


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,476,719
Number of Sequences: 27539
Number of extensions: 268270
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 12,573,161
effective HSP length: 80
effective length of query: 187
effective length of database: 10,370,041
effective search space: 1939197667
effective search space used: 1939197667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)