BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000069-TA|BGIBMGA000069-PA|IPR004343|Plus-3 (763 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 145 2e-35 SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 40 0.002 SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 35 0.048 SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.26 SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 32 0.34 SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.34 SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 31 0.45 SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 1.0 SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 30 1.0 SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 1.0 SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 30 1.0 SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 1.4 SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 1.4 SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 30 1.4 SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 1.8 SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 29 1.8 SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 29 2.4 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 2.4 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 3.2 SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 4.2 SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 4.2 SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 4.2 SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 28 4.2 SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 4.2 SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 28 4.2 SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 28 5.6 SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 5.6 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 5.6 SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 5.6 SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 27 7.4 SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 7.4 SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 7.4 SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a... 27 7.4 SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 7.4 SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 27 7.4 SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 9.7 SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 27 9.7 SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 9.7 SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 9.7 SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 9.7 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 9.7 >SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 2|||Manual Length = 560 Score = 145 bits (351), Expect = 2e-35 Identities = 68/231 (29%), Positives = 128/231 (55%), Gaps = 3/231 (1%) Query: 404 INKLRLSRFKLERLVHLPFFTRVVTGCFVRIGIGNNNGNPVYRVAEIIDVHETGKVYNLG 463 +N +RL R + ++ P F VTGCFVR+ IG +G VYR+ ++ + E+ K Y + Sbjct: 220 LNAIRLGRKHVAEYMYHPIFESTVTGCFVRVKIGERDGQGVYRLCQVKGILESRKPYRVD 279 Query: 464 NTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTMDFVRNKINE 523 T + HG R F + +SN+ F+D +F +W+ + + P+ +FV+ K+N+ Sbjct: 280 GVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDKLSMPSKNFVQRKLND 339 Query: 524 VKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSK 583 ++ Y E+++ I+ K+ P+N A +KT+L + R A + G+ ELV +++ + Sbjct: 340 LRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAAYVAGNAELVKEIDDQ 399 Query: 584 IEELEERANQLDKTRTSSIQSISYINNRNRKLN---VETAEKAIMEEVKRI 631 + LEE + ++ S++ ++ +N RNR+ N + AE+ + EE +R+ Sbjct: 400 LNTLEELSMGSNQNSNSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRL 450 Score = 33.5 bits (73), Expect = 0.11 Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 159 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 199 E DE DRA++ AM+E ERE +F+R E + R E+ Sbjct: 77 EGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERREL 117 >SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 841 Score = 39.5 bits (88), Expect = 0.002 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 498 HKWYKALKDANKKPPTMDF-VRNKINEVKQALMYEFKEEDIEKIVAEKERF-RSHPTNYA 555 HK K + ++ + P D+ V ++++++ + +D+ A E + RS PT+ A Sbjct: 520 HK-LKMVDRSSAELPNFDYLVSDQVHKIVEINDEHADCDDVNFSTASFEIYERSIPTHGA 578 Query: 556 MKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKL 615 + +++K RD + L DDE+ DLNS + + NQ T +S+ Q ISY N + Sbjct: 579 DSERKILK-RD-SLLNEDDEIFNDLNS---DKTIKTNQATSTSSSNTQEISYTGTLNDNI 633 Query: 616 N 616 N Sbjct: 634 N 634 >SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 464 Score = 34.7 bits (76), Expect = 0.048 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 504 LKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMK 563 +K N+K ++ + ++ +++ Q L+ E EE EK+ AE++ F ++ + +KK L + Sbjct: 196 MKQINEKEEKIEEISDETDKL-QKLLRELDEEK-EKVYAEEQEFYNNLNQFQIKKLSLER 253 Query: 564 ERDVAQL 570 + D A L Sbjct: 254 QYDCANL 260 Score = 29.5 bits (63), Expect = 1.8 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 534 EEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGD-DELVMDLNSKIEELEERAN 592 EE + + A KE + + +Q + E + A L + DEL+ +N K E++EE ++ Sbjct: 152 EEMSKTLRALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEISD 211 Query: 593 QLDK 596 + DK Sbjct: 212 ETDK 215 >SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1324 Score = 32.3 bits (70), Expect = 0.26 Identities = 26/116 (22%), Positives = 63/116 (54%), Gaps = 8/116 (6%) Query: 521 INEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDL 580 +++++++L + K E I + EK++ + K QL E+ + Q+ D L+ Sbjct: 498 LDDIRKSL--QGKTEGISNAIEEKQKAMAPALE---KINQLTSEKQILQVELD-MLLNKE 551 Query: 581 NSKIEELEERANQLDKTRTSSIQSISYINNRNRKL-NVETAEKAIMEEVKRIKKKT 635 N I ++E + LDK R + ++ + ++++ + L +++ +K + + ++R KK+T Sbjct: 552 NDLINDVESSQSSLDKLRNDAEENRNILSSKLKVLSDLKGEKKDVSKNIER-KKET 606 Score = 30.3 bits (65), Expect = 1.0 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Query: 563 KERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEK 622 +ER + QL+ D + + + N + L+ + + +DK +++I+ INN ++T + Sbjct: 870 EERRILQLKSDLKSIRNNNERKRNLQNKISNMDK----EVEAIN-INNEGLVTEIKTLQD 924 Query: 623 AIME 626 IME Sbjct: 925 KIME 928 >SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 633 Score = 31.9 bits (69), Expect = 0.34 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 501 YKALKDANKKPPTMDFVRNKINEVK--QALMYEFKEEDIEKIVAEKERFRSHPTNYAMKK 558 + A+K P T++F+R+++ + K +A + E ++ V E + SH K Sbjct: 122 FYAIKGREASPQTVEFLRSQLEKCKIVEASKFLRGEAPLDIKVPNTEYYASHFPKIEEKN 181 Query: 559 TQLMKERDVAQLRGDDELVMDLNSKIEELEER-ANQLDKTRTSSIQSISYINNRNRKLNV 617 Q A++ D + DL K R A L K+ TS +SI+ I +K+ V Sbjct: 182 YQYAIYLSFAEIYND--RIFDLLEKASFFGHRHALSLKKSSTSDKKSIAGI----QKVFV 235 Query: 618 ETAEKA--IMEEVKRIKKKT 635 +A ++++V +++K T Sbjct: 236 SNTTEAYKLIQKVLQLRKST 255 >SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schizosaccharomyces pombe|chr 1|||Manual Length = 625 Score = 31.9 bits (69), Expect = 0.34 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%) Query: 455 ETGK-VYNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKAL--KDANKKP 511 E GK + + G + F RH T + + V+ G +H K K + K Sbjct: 8 ENGKAIVSSGVLNSVSAFVRRHRTF--VYTIGAVAVFATVGGVYHVQQKKASHKRSKKLK 65 Query: 512 PTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLR 571 D +K+NE K KEED++ K+ + A KK + K++ A+ Sbjct: 66 AHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAAAAAKKKKKNKKKVKAKKV 125 Query: 572 GD---DELVMDLNSKIEELEERANQLDKTRT 599 GD D++ + + K EERA + +T Sbjct: 126 GDSSVDKIATEESVKSMTKEERAKLAAELKT 156 >SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 31.5 bits (68), Expect = 0.45 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 5/113 (4%) Query: 526 QALMYEFKEEDIEKIVAEKERFRSHPTNYAMKK-TQLMKERDVAQLRGDDELVMDLNSKI 584 +AL+ +FK E +E + + +S N+ ++K T L +E + LR D D +++ Sbjct: 825 RALLDQFKSEFLEMSDEDFSKHKSSLINFMLEKHTNLKEESSMYWLRICDGF-YDF-TRL 882 Query: 585 EELEERANQLDKTRTSS--IQSISYINNRNRKLNVETAEKAIMEEVKRIKKKT 635 E+ E + + K S I +I Y +K++V + +EV I T Sbjct: 883 EKQAEIVSTITKDEFYSFFINNIHYEGENTKKISVHVVSQRCEDEVYEIPNVT 935 >SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 30.3 bits (65), Expect = 1.0 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 519 NKINEVKQALMYEFKEEDIEKIVAEKE----RFRSHPTNYAMKKTQLMKERDVAQLRGDD 574 N+IN K+ L KE+D++K + E + H + + T+L + + R Sbjct: 217 NEIN--KRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFK- 273 Query: 575 ELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEE-VKRIK 632 E S I++ +E++++ KT + + IN+ +K++ EK ++EE V+R K Sbjct: 274 EFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVSDIALEKQLLEEAVERYK 332 >SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosaccharomyces pombe|chr 2|||Manual Length = 376 Score = 30.3 bits (65), Expect = 1.0 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Query: 164 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWE 198 DE R ++ + +KER++E F ERRD + +W+ Sbjct: 308 DESRRKKIELLEKKERDEEQFLEKERRDTAR-KWD 341 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 30.3 bits (65), Expect = 1.0 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 502 KALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIV---AEKERFRSHPTNYAMKK 558 K+ + N ++D +RN++NE++ L ++ +K V +E + R Y + Sbjct: 145 KSFVELNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQ 204 Query: 559 TQLMKERDVAQLRGDD 574 +L+ ERD + DD Sbjct: 205 RKLIAERDDEKTALDD 220 >SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 229 Score = 30.3 bits (65), Expect = 1.0 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 536 DIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLD 595 D EK +K+ +S + A+ + D + D E V L I++ ++R + Sbjct: 126 DYEKYDKDKKEEKSKSRSVALYDEA--ERLDWVSNKPDKEHVERLVESIKKQDQRRLKNT 183 Query: 596 KTR-TSSIQSISYINNRNRKLNVE 618 K R T I++IN RNRK N++ Sbjct: 184 KRRGTDEEDHITFINERNRKFNLK 207 >SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 29.9 bits (64), Expect = 1.4 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 543 EKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQ--LDKTRTS 600 E R+R + K +L K+ DVA+ ++ D S +EL+ + N+ L + + Sbjct: 1268 ELTRWRDTFYDCIQKIEELEKQIDVAR-----DVAEDTKSLGKELQNKINEKNLAEQKVE 1322 Query: 601 SIQSISYINNRNRKLNVETAEKAIMEE 627 +QS S+ N+ L + A+KAI+++ Sbjct: 1323 ELQSQSFTKNKEVDLLRKKAQKAILKQ 1349 >SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1115 Score = 29.9 bits (64), Expect = 1.4 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 5/134 (3%) Query: 505 KDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKE 564 +D ++ ++ + ++ + K+ L KE D + V K R + +KT E Sbjct: 532 EDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENE 591 Query: 565 RDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKA- 623 ++ + E V L +I +L ER N + + + N K ++ K Sbjct: 592 ESISLFK---EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTS 648 Query: 624 -IMEEVKRIKKKTD 636 ++E++K + + D Sbjct: 649 NLLEQLKMTEAEVD 662 >SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 747 Score = 29.9 bits (64), Expect = 1.4 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 22/157 (14%) Query: 522 NEVKQALMY--EFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMD 579 NE +L Y ED+ K V + R P Y +KK+Q E D ++L D+E V+D Sbjct: 73 NENPSSLKYLSSINPEDLGKKVEKGPR----PDIYDLKKSQQF-ELDTSRLSSDEESVLD 127 Query: 580 LNSKIE-----ELEERA---------NQLD-KTRTSSIQSISYINNRNRKLNVETAEKAI 624 + E EL R N+L KT+ +Q++ N + E+ +A Sbjct: 128 YSKDSEDEQDYELRPRVSSSWNNESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEAS 187 Query: 625 MEEVKRIKKKTDDPFTRRHTKPVMNFKSQSSRSQELI 661 +E IK + + P + K Q +E + Sbjct: 188 LEIDSDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEAL 224 >SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1372 Score = 29.5 bits (63), Expect = 1.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Query: 706 SSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKR 749 S +S S H FE+++ + KS + K T+K K PKR Sbjct: 716 SEPSSAVSTHSFEVHLSMPGTQIKSANLAEKMETSKHKVFNPKR 759 >SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosaccharomyces pombe|chr 2|||Manual Length = 441 Score = 29.5 bits (63), Expect = 1.8 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 277 PGEILDES-KDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAE 335 PG + + P ER ASP+ T ++ ++ + ++L+ + E Sbjct: 189 PGNVTGTTFSSQAPEERIASPI---STSSPESLTNQSSSLQSSLQTSSMAPRNLLDQSTE 245 Query: 336 ADLIGGSSKQTVKLKASDIYSDDSGSES 363 D++ G+S + V+++ + + + GS++ Sbjct: 246 KDIVVGASDELVRIELTKLSKEAGGSKT 273 >SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1049 Score = 29.1 bits (62), Expect = 2.4 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 13/149 (8%) Query: 480 RAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTM--DFVRNKINEVKQAL-MYEFKE-- 534 R F E + ++F D E L+ N+ P + ++R +N L +Y K Sbjct: 237 RTFSCELFTTEDFEDKE------TLELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKS 290 Query: 535 --EDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERAN 592 E++ K E+ R+ P N ++ + ++ L LN K E N Sbjct: 291 LFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIESEFSSYASLSEVLNRKASEDLLELN 350 Query: 593 QLDKTRTSSIQSISYINNRNRKLNVETAE 621 ++K + + + R+ NVETA+ Sbjct: 351 FMEKASSGTNSVFNASGERSESANVETAQ 379 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 29.1 bits (62), Expect = 2.4 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 487 VSNQEFTD--GEFHKW--YKALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDI--EKI 540 ++ QEF+D G+F + +KD N KP FV +E Q + E +++ +K+ Sbjct: 272 ITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331 Query: 541 VAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEE 586 + + + K+ + MK + + +G + + +L ++++ Sbjct: 332 YVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 28.7 bits (61), Expect = 3.2 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 517 VRNKINEVKQALMYEFKEEDI----EKIVAEKERFRSHPTNYAMKKTQLMKE-RDVAQLR 571 +R+++ KQ E KE +I ++VAEKE+ + N +K+Q +KE + AQ Sbjct: 1573 LRSQLESTKQYYEKE-KETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKN 1631 Query: 572 GDDELVMDLNSKI-EELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKR 630 + +++ I +++EE+ + ++ + K + EK + + Sbjct: 1632 SSENTHDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSKAKISVYEKKTRDLQNK 1691 Query: 631 IK--KKTDDPFTRRHTKPVMNFKSQSS 655 I ++T + ++ + P +S SS Sbjct: 1692 ITQLEETIENLNKQLSNPEKTDESTSS 1718 >SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 28.3 bits (60), Expect = 4.2 Identities = 14/78 (17%), Positives = 38/78 (48%) Query: 564 ERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKA 623 + ++ + GD + + DL+ ++EL + + + ++ I+ ++ + E+A Sbjct: 128 DAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQA 187 Query: 624 IMEEVKRIKKKTDDPFTR 641 I+E+V + +T P + Sbjct: 188 IIEKVYQYLTETKQPIRK 205 >SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 28.3 bits (60), Expect = 4.2 Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 525 KQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKI 584 KQ + E + EK ++KE ++ + Q + + AQ +D+L+ + + + Sbjct: 521 KQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDAL 580 Query: 585 EELEERANQLDKTRTSSIQS 604 ELEE QL K++ Q+ Sbjct: 581 SELEEDYRQLKKSKKRKNQA 600 >SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 28.3 bits (60), Expect = 4.2 Identities = 16/86 (18%), Positives = 43/86 (50%), Gaps = 6/86 (6%) Query: 580 LNSKIEELEE-RANQLDKTRTSSIQSISYINN-----RNRKLNVETAEKAIMEEVKRIKK 633 +N ++++L +A+ T+ ++++ + N + K E +K I E ++++ + Sbjct: 264 VNDQLQQLRSGKASTSPSTKDTNMRLVEGHNEETLALQRGKYTQEEVDKLIQERMEKVAE 323 Query: 634 KTDDPFTRRHTKPVMNFKSQSSRSQE 659 ++ +HT+ + FK+ +R E Sbjct: 324 DLHAQYSAKHTQKINAFKANYARKYE 349 >SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual Length = 1279 Score = 28.3 bits (60), Expect = 4.2 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 563 KERDVAQLRGDDELVMDLNSKIEEL-EERANQLDKTRTSSIQSISYINNR 611 +ER+ LRGD E+V L +++ E+ EE NQ+++ + IS I R Sbjct: 1007 EERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGR 1056 >SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 667 Score = 28.3 bits (60), Expect = 4.2 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Query: 541 VAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTS 600 + EKE ++ N +K+ +E+D + G+ +V N K + +++ Q K + + Sbjct: 57 ILEKE---NNAINSEAEKSVSEEEQDEPLVEGESPIV-STNKKAKNKKKKKKQQKKKKVT 112 Query: 601 SIQSISYINNRNRKLNVETAEKAIMEEVKRIKK 633 + + ++ N KL + K I +++ I+K Sbjct: 113 GKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEK 145 >SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 28.3 bits (60), Expect = 4.2 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 598 RTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDD---PFTRRHTKPVMNFKSQS 654 +TS +I NN N K + ++ K + +E K+K+D+ P ++ K + +S+ Sbjct: 242 KTSQSIAIPLWNNPNLKELIASSRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKESKD 301 Query: 655 SRSQEL 660 S+ Q + Sbjct: 302 SKQQNV 307 >SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 27.9 bits (59), Expect = 5.6 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 9/87 (10%) Query: 575 ELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKK 634 EL+ +L + L++ ANQ K++T +S NN R N ++ +I + K++++K Sbjct: 242 ELIQELKHEGSRLKQAANQKRKSKT-----VSSKNNFQRLQN--SSLHSIFLDPKQLEQK 294 Query: 635 TDDPFTRRHTKPVMNFKSQSSRSQELI 661 + R++ ++NF S++ +I Sbjct: 295 AQEAEERKNV--LLNFDRTSAQRTRII 319 >SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 430 Score = 27.9 bits (59), Expect = 5.6 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 523 EVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGD---DELVMD 579 E+ + F+EE++ K+ + ++L D+ + R + DE+ Sbjct: 75 EISEEPQKLFQEENV-KVYIYDSAISLSSVRASFPISELGIRMDIIKARAEPREDEIRAS 133 Query: 580 LNSKI-EELEERANQL--DKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTD 636 +S + +E++ +L K T+ + ++++ RN++LN E E ++E+ I+K + Sbjct: 134 FSSLVNKEIKRTVEELLLSKRSTNRLSLLAFM--RNQQLNYEAYETKLLEDASTIEKSLE 191 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 27.9 bits (59), Expect = 5.6 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Query: 95 KQASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXXXX 154 K++SSD S E SE+ S+ SE++++ + EE Sbjct: 160 KESSSDSSS---ESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSS 216 Query: 155 XGYDENLMGDEEDRARLAAMSEKEREQE 182 D + D E + ++ EK+R+ E Sbjct: 217 ESGDSDSSSDSESES--SSEDEKKRKAE 242 >SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces pombe|chr 3|||Manual Length = 262 Score = 27.9 bits (59), Expect = 5.6 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 93 PPKQASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXX 152 PP Q +DEE +E E E E G E++++ + +G Sbjct: 168 PPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE--EDDGDGDGEGDGDGEGENDGKGS 225 Query: 153 XXXGYDENLMGDEEDRARLAAMSEKEREQE 182 +E + +EE+ + LA S E + E Sbjct: 226 EEEEEEEIDIEEEEEESALANASAAEEKPE 255 >SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 298 Score = 27.5 bits (58), Expect = 7.4 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 95 KQASSDEESKETEPKRSETRKSIES---AGSEKKKDTFSEPEE 134 K SS +E+ PK E K +ES SE+KK+ +E +E Sbjct: 11 KDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKE 53 >SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 601 Score = 27.5 bits (58), Expect = 7.4 Identities = 13/35 (37%), Positives = 17/35 (48%) Query: 460 YNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTD 494 YNL N + H TQ+ F EF+SN +D Sbjct: 436 YNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSD 470 >SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 749 Score = 27.5 bits (58), Expect = 7.4 Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 309 DDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSES 363 D+K+ + RA R S + D+EAD + + ++V ++ D+ ES Sbjct: 635 DEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDES 689 >SPCC1739.07 |||substrate-specific nuclear cofactor for exosome activity |Schizosaccharomyces pombe|chr 3|||Manual Length = 133 Score = 27.5 bits (58), Expect = 7.4 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 560 QLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLN-VE 618 QL DV + D E + +L ELE+ +L T + +I S Y KLN ++ Sbjct: 15 QLDNVEDVLKPLKDAESIFELAEGKSELEQA--KLYITMSYAINSTLY---SFYKLNGID 69 Query: 619 TAEKAIMEEVKRIK 632 +E+ +M+E++R+K Sbjct: 70 ASERPVMQELQRVK 83 >SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 233 Score = 27.5 bits (58), Expect = 7.4 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 583 KIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEV--KRIKKKTDDPFT 640 K++ LE R+ + DK S + + +N +L + A+K +E+ K++ + D Sbjct: 9 KLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68 Query: 641 RRHTKPVMNFKSQSSRSQ 658 P KS+ + + Sbjct: 69 SVSNPPHKTLKSKRQKGK 86 >SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosaccharomyces pombe|chr 3|||Manual Length = 343 Score = 27.5 bits (58), Expect = 7.4 Identities = 20/89 (22%), Positives = 40/89 (44%) Query: 531 EFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEER 590 +F +E+IE+ + E P A ++ KER+ L+ + K +LEE Sbjct: 2 DFLKEEIERKRRQLEGTSELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRKLEEE 61 Query: 591 ANQLDKTRTSSIQSISYINNRNRKLNVET 619 + ++ + + + ++RN +L ET Sbjct: 62 RLKYEEKKLRISRLANKESSRNEELLTET 90 >SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme |Schizosaccharomyces pombe|chr 2|||Manual Length = 1012 Score = 27.1 bits (57), Expect = 9.7 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 589 ERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDDPFTRRH 643 ++ L+ T SS S+ Y N + K E I E V++I KK +PF R+H Sbjct: 935 QKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPF-RKH 988 >SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 169 Score = 27.1 bits (57), Expect = 9.7 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 12/104 (11%) Query: 524 VKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSK 583 + A +EFKE +E+ E+F+ Y +T ++ R VA L D+ + D+ Sbjct: 9 IPPAQFFEFKELSMEEAQGHLEKFQEAIAKYKFMETSVV--RRVASL---DDKIPDIRKT 63 Query: 584 IEELEERANQLDKTRTSSIQSISY-INNR-NRKLNVETAEKAIM 625 ++ + Q K R +++Y +N+ N K VE + + Sbjct: 64 LQSV-----QFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYL 102 >SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 256 Score = 27.1 bits (57), Expect = 9.7 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 562 MKERDVAQLRGDDELVM--DLNSKI-----EELEERANQLDKTRTSSIQSISYINNRNRK 614 MK V + D +M DL S+I E+L+E + +T S+ SIS+ ++ +RK Sbjct: 156 MKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKSLDSISHSSSSSRK 215 Query: 615 LNVE 618 + E Sbjct: 216 SSTE 219 >SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1405 Score = 27.1 bits (57), Expect = 9.7 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 507 ANKKPPTMDFVRNKINEVKQALMYEFK---EEDIEKIVAEKERFRSHPTNYAMKKTQ 560 AN P K NE + M E ++DI + ++ K+ RSH T+ A +++Q Sbjct: 119 ANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPERLSTKKGNRSHTTSNAKRRSQ 175 >SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 463 Score = 27.1 bits (57), Expect = 9.7 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 508 NKKPPTMDFVRNKINEVKQ-ALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERD 566 N++ +++ VR + + ++ Y+ ++E +E +++ F + +YA+K+ + + E D Sbjct: 265 NREFKSLEAVRAHMQQKGHTSIAYDTEDEQLE--LSDFYDFTTSYPDYAVKQDETVVEED 322 Query: 567 VAQLRGDDELVMD--LNSKIEELE 588 + GD E V D NS ++ LE Sbjct: 323 GSSGEGDWEDVSDDSDNSSLDSLE 346 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 27.1 bits (57), Expect = 9.7 Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 533 KEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERAN 592 KE+ ++K A++ER R ++ + + +LR +++ ++E+LE+ Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERI 135 Query: 593 QLDK 596 +L + Sbjct: 136 RLQE 139 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.310 0.127 0.346 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,511,714 Number of Sequences: 5004 Number of extensions: 92400 Number of successful extensions: 377 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 28 Number of HSP's that attempted gapping in prelim test: 353 Number of HSP's gapped (non-prelim): 52 length of query: 763 length of database: 2,362,478 effective HSP length: 78 effective length of query: 685 effective length of database: 1,972,166 effective search space: 1350933710 effective search space used: 1350933710 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.7 bits) S2: 57 (27.1 bits)
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