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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000069-TA|BGIBMGA000069-PA|IPR004343|Plus-3
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...   145   2e-35
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    40   0.002
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    35   0.048
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    32   0.26 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    32   0.34 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    32   0.34 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    31   0.45 
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   1.0  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    30   1.0  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    30   1.0  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    30   1.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    30   1.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    30   1.4  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    30   1.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   1.8  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    29   1.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    29   2.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   2.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   3.2  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    28   4.2  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    28   4.2  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    28   4.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        28   4.2  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    28   4.2  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   4.2  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    28   5.6  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   5.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   5.6  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    28   5.6  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    27   7.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   7.4  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   7.4  
SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a...    27   7.4  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   7.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   7.4  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   9.7  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    27   9.7  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   9.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   9.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   9.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   9.7  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score =  145 bits (351), Expect = 2e-35
 Identities = 68/231 (29%), Positives = 128/231 (55%), Gaps = 3/231 (1%)

Query: 404 INKLRLSRFKLERLVHLPFFTRVVTGCFVRIGIGNNNGNPVYRVAEIIDVHETGKVYNLG 463
           +N +RL R  +   ++ P F   VTGCFVR+ IG  +G  VYR+ ++  + E+ K Y + 
Sbjct: 220 LNAIRLGRKHVAEYMYHPIFESTVTGCFVRVKIGERDGQGVYRLCQVKGILESRKPYRVD 279

Query: 464 NTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTMDFVRNKINE 523
              T    +  HG   R F +  +SN+ F+D +F +W+  + +     P+ +FV+ K+N+
Sbjct: 280 GVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDKLSMPSKNFVQRKLND 339

Query: 524 VKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSK 583
           ++    Y   E+++  I+  K+     P+N A +KT+L + R  A + G+ ELV +++ +
Sbjct: 340 LRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAAYVAGNAELVKEIDDQ 399

Query: 584 IEELEERANQLDKTRTSSIQSISYINNRNRKLN---VETAEKAIMEEVKRI 631
           +  LEE +   ++   S++  ++ +N RNR+ N   +  AE+ + EE +R+
Sbjct: 400 LNTLEELSMGSNQNSNSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRL 450



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 159 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 199
           E    DE DRA++ AM+E ERE  +F+R E    +  R E+
Sbjct: 77  EGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERREL 117


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 498 HKWYKALKDANKKPPTMDF-VRNKINEVKQALMYEFKEEDIEKIVAEKERF-RSHPTNYA 555
           HK  K +  ++ + P  D+ V ++++++ +        +D+    A  E + RS PT+ A
Sbjct: 520 HK-LKMVDRSSAELPNFDYLVSDQVHKIVEINDEHADCDDVNFSTASFEIYERSIPTHGA 578

Query: 556 MKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKL 615
             + +++K RD + L  DDE+  DLNS   +   + NQ   T +S+ Q ISY    N  +
Sbjct: 579 DSERKILK-RD-SLLNEDDEIFNDLNS---DKTIKTNQATSTSSSNTQEISYTGTLNDNI 633

Query: 616 N 616
           N
Sbjct: 634 N 634


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 504 LKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMK 563
           +K  N+K   ++ + ++ +++ Q L+ E  EE  EK+ AE++ F ++   + +KK  L +
Sbjct: 196 MKQINEKEEKIEEISDETDKL-QKLLRELDEEK-EKVYAEEQEFYNNLNQFQIKKLSLER 253

Query: 564 ERDVAQL 570
           + D A L
Sbjct: 254 QYDCANL 260



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 534 EEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGD-DELVMDLNSKIEELEERAN 592
           EE  + + A KE  + +        +Q + E + A L  + DEL+  +N K E++EE ++
Sbjct: 152 EEMSKTLRALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEISD 211

Query: 593 QLDK 596
           + DK
Sbjct: 212 ETDK 215


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 26/116 (22%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 521 INEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDL 580
           +++++++L  + K E I   + EK++  +       K  QL  E+ + Q+  D  L+   
Sbjct: 498 LDDIRKSL--QGKTEGISNAIEEKQKAMAPALE---KINQLTSEKQILQVELD-MLLNKE 551

Query: 581 NSKIEELEERANQLDKTRTSSIQSISYINNRNRKL-NVETAEKAIMEEVKRIKKKT 635
           N  I ++E   + LDK R  + ++ + ++++ + L +++  +K + + ++R KK+T
Sbjct: 552 NDLINDVESSQSSLDKLRNDAEENRNILSSKLKVLSDLKGEKKDVSKNIER-KKET 606



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 563 KERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEK 622
           +ER + QL+ D + + + N +   L+ + + +DK     +++I+ INN      ++T + 
Sbjct: 870 EERRILQLKSDLKSIRNNNERKRNLQNKISNMDK----EVEAIN-INNEGLVTEIKTLQD 924

Query: 623 AIME 626
            IME
Sbjct: 925 KIME 928


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 501 YKALKDANKKPPTMDFVRNKINEVK--QALMYEFKEEDIEKIVAEKERFRSHPTNYAMKK 558
           + A+K     P T++F+R+++ + K  +A  +   E  ++  V   E + SH      K 
Sbjct: 122 FYAIKGREASPQTVEFLRSQLEKCKIVEASKFLRGEAPLDIKVPNTEYYASHFPKIEEKN 181

Query: 559 TQLMKERDVAQLRGDDELVMDLNSKIEELEER-ANQLDKTRTSSIQSISYINNRNRKLNV 617
            Q       A++  D   + DL  K      R A  L K+ TS  +SI+ I    +K+ V
Sbjct: 182 YQYAIYLSFAEIYND--RIFDLLEKASFFGHRHALSLKKSSTSDKKSIAGI----QKVFV 235

Query: 618 ETAEKA--IMEEVKRIKKKT 635
               +A  ++++V +++K T
Sbjct: 236 SNTTEAYKLIQKVLQLRKST 255


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 455 ETGK-VYNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKAL--KDANKKP 511
           E GK + + G   +   F  RH T    + +  V+      G +H   K    K + K  
Sbjct: 8   ENGKAIVSSGVLNSVSAFVRRHRTF--VYTIGAVAVFATVGGVYHVQQKKASHKRSKKLK 65

Query: 512 PTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLR 571
              D   +K+NE K       KEED++     K+   +     A KK +  K++  A+  
Sbjct: 66  AHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAAAAAKKKKKNKKKVKAKKV 125

Query: 572 GD---DELVMDLNSKIEELEERANQLDKTRT 599
           GD   D++  + + K    EERA    + +T
Sbjct: 126 GDSSVDKIATEESVKSMTKEERAKLAAELKT 156


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 526 QALMYEFKEEDIEKIVAEKERFRSHPTNYAMKK-TQLMKERDVAQLRGDDELVMDLNSKI 584
           +AL+ +FK E +E    +  + +S   N+ ++K T L +E  +  LR  D    D  +++
Sbjct: 825 RALLDQFKSEFLEMSDEDFSKHKSSLINFMLEKHTNLKEESSMYWLRICDGF-YDF-TRL 882

Query: 585 EELEERANQLDKTRTSS--IQSISYINNRNRKLNVETAEKAIMEEVKRIKKKT 635
           E+  E  + + K    S  I +I Y     +K++V    +   +EV  I   T
Sbjct: 883 EKQAEIVSTITKDEFYSFFINNIHYEGENTKKISVHVVSQRCEDEVYEIPNVT 935


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 519 NKINEVKQALMYEFKEEDIEKIVAEKE----RFRSHPTNYAMKKTQLMKERDVAQLRGDD 574
           N+IN  K+ L    KE+D++K   + E    +   H  +   + T+L +  +    R   
Sbjct: 217 NEIN--KRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFK- 273

Query: 575 ELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEE-VKRIK 632
           E      S I++ +E++++  KT   + +    IN+  +K++    EK ++EE V+R K
Sbjct: 274 EFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVSDIALEKQLLEEAVERYK 332


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 164 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWE 198
           DE  R ++  + +KER++E F   ERRD  + +W+
Sbjct: 308 DESRRKKIELLEKKERDEEQFLEKERRDTAR-KWD 341


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 502 KALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIV---AEKERFRSHPTNYAMKK 558
           K+  + N    ++D +RN++NE++  L     ++  +K V   +E +  R     Y   +
Sbjct: 145 KSFVELNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQ 204

Query: 559 TQLMKERDVAQLRGDD 574
            +L+ ERD  +   DD
Sbjct: 205 RKLIAERDDEKTALDD 220


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 536 DIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLD 595
           D EK   +K+  +S   + A+      +  D    + D E V  L   I++ ++R  +  
Sbjct: 126 DYEKYDKDKKEEKSKSRSVALYDEA--ERLDWVSNKPDKEHVERLVESIKKQDQRRLKNT 183

Query: 596 KTR-TSSIQSISYINNRNRKLNVE 618
           K R T     I++IN RNRK N++
Sbjct: 184 KRRGTDEEDHITFINERNRKFNLK 207


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 543  EKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQ--LDKTRTS 600
            E  R+R    +   K  +L K+ DVA+     ++  D  S  +EL+ + N+  L + +  
Sbjct: 1268 ELTRWRDTFYDCIQKIEELEKQIDVAR-----DVAEDTKSLGKELQNKINEKNLAEQKVE 1322

Query: 601  SIQSISYINNRNRKLNVETAEKAIMEE 627
             +QS S+  N+   L  + A+KAI+++
Sbjct: 1323 ELQSQSFTKNKEVDLLRKKAQKAILKQ 1349


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 505 KDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKE 564
           +D ++    ++ +  ++ + K+ L    KE D  + V  K R  +       +KT    E
Sbjct: 532 EDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENE 591

Query: 565 RDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKA- 623
             ++  +   E V  L  +I +L ER N          + +  +   N K   ++  K  
Sbjct: 592 ESISLFK---EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTS 648

Query: 624 -IMEEVKRIKKKTD 636
            ++E++K  + + D
Sbjct: 649 NLLEQLKMTEAEVD 662


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 22/157 (14%)

Query: 522 NEVKQALMY--EFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMD 579
           NE   +L Y      ED+ K V +  R    P  Y +KK+Q   E D ++L  D+E V+D
Sbjct: 73  NENPSSLKYLSSINPEDLGKKVEKGPR----PDIYDLKKSQQF-ELDTSRLSSDEESVLD 127

Query: 580 LNSKIE-----ELEERA---------NQLD-KTRTSSIQSISYINNRNRKLNVETAEKAI 624
            +   E     EL  R          N+L  KT+   +Q++    N   +   E+  +A 
Sbjct: 128 YSKDSEDEQDYELRPRVSSSWNNESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEAS 187

Query: 625 MEEVKRIKKKTDDPFTRRHTKPVMNFKSQSSRSQELI 661
           +E    IK +       +   P +  K Q    +E +
Sbjct: 188 LEIDSDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEAL 224


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 706 SSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKR 749
           S  +S  S H FE+++ +     KS +   K  T+K K   PKR
Sbjct: 716 SEPSSAVSTHSFEVHLSMPGTQIKSANLAEKMETSKHKVFNPKR 759


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 277 PGEILDES-KDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAE 335
           PG +   +     P ER ASP+    T    ++ ++  +  ++L+    +         E
Sbjct: 189 PGNVTGTTFSSQAPEERIASPI---STSSPESLTNQSSSLQSSLQTSSMAPRNLLDQSTE 245

Query: 336 ADLIGGSSKQTVKLKASDIYSDDSGSES 363
            D++ G+S + V+++ + +  +  GS++
Sbjct: 246 KDIVVGASDELVRIELTKLSKEAGGSKT 273


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 13/149 (8%)

Query: 480 RAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTM--DFVRNKINEVKQAL-MYEFKE-- 534
           R F  E  + ++F D E       L+  N+  P +   ++R  +N     L +Y  K   
Sbjct: 237 RTFSCELFTTEDFEDKE------TLELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKS 290

Query: 535 --EDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERAN 592
             E++ K   E+   R+ P N   ++     +   ++      L   LN K  E     N
Sbjct: 291 LFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIESEFSSYASLSEVLNRKASEDLLELN 350

Query: 593 QLDKTRTSSIQSISYINNRNRKLNVETAE 621
            ++K  + +    +    R+   NVETA+
Sbjct: 351 FMEKASSGTNSVFNASGERSESANVETAQ 379


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 487 VSNQEFTD--GEFHKW--YKALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDI--EKI 540
           ++ QEF+D  G+F +      +KD N KP    FV    +E  Q  + E  +++   +K+
Sbjct: 272 ITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331

Query: 541 VAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEE 586
              + + +        K+ + MK   + + +G +  + +L  ++++
Sbjct: 332 YVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 517  VRNKINEVKQALMYEFKEEDI----EKIVAEKERFRSHPTNYAMKKTQLMKE-RDVAQLR 571
            +R+++   KQ    E KE +I     ++VAEKE+ +    N   +K+Q +KE  + AQ  
Sbjct: 1573 LRSQLESTKQYYEKE-KETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKN 1631

Query: 572  GDDELVMDLNSKI-EELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKR 630
              +    +++  I +++EE+  +        ++ +        K  +   EK   +   +
Sbjct: 1632 SSENTHDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSKAKISVYEKKTRDLQNK 1691

Query: 631  IK--KKTDDPFTRRHTKPVMNFKSQSS 655
            I   ++T +   ++ + P    +S SS
Sbjct: 1692 ITQLEETIENLNKQLSNPEKTDESTSS 1718


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/78 (17%), Positives = 38/78 (48%)

Query: 564 ERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKA 623
           + ++  + GD + + DL+  ++EL  +  +  +     ++ I+       ++  +  E+A
Sbjct: 128 DAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQA 187

Query: 624 IMEEVKRIKKKTDDPFTR 641
           I+E+V +   +T  P  +
Sbjct: 188 IIEKVYQYLTETKQPIRK 205


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 525 KQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKI 584
           KQ  + E +    EK  ++KE  ++     +    Q +  +  AQ   +D+L+ + +  +
Sbjct: 521 KQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDAL 580

Query: 585 EELEERANQLDKTRTSSIQS 604
            ELEE   QL K++    Q+
Sbjct: 581 SELEEDYRQLKKSKKRKNQA 600


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/86 (18%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 580 LNSKIEELEE-RANQLDKTRTSSIQSISYINN-----RNRKLNVETAEKAIMEEVKRIKK 633
           +N ++++L   +A+    T+ ++++ +   N      +  K   E  +K I E ++++ +
Sbjct: 264 VNDQLQQLRSGKASTSPSTKDTNMRLVEGHNEETLALQRGKYTQEEVDKLIQERMEKVAE 323

Query: 634 KTDDPFTRRHTKPVMNFKSQSSRSQE 659
                ++ +HT+ +  FK+  +R  E
Sbjct: 324 DLHAQYSAKHTQKINAFKANYARKYE 349


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 563  KERDVAQLRGDDELVMDLNSKIEEL-EERANQLDKTRTSSIQSISYINNR 611
            +ER+   LRGD E+V  L +++ E+ EE  NQ+++      + IS I  R
Sbjct: 1007 EERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGR 1056


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 541 VAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTS 600
           + EKE   ++  N   +K+   +E+D   + G+  +V   N K +  +++  Q  K + +
Sbjct: 57  ILEKE---NNAINSEAEKSVSEEEQDEPLVEGESPIV-STNKKAKNKKKKKKQQKKKKVT 112

Query: 601 SIQSISYINNRNRKLNVETAEKAIMEEVKRIKK 633
             + +   ++ N KL    + K I +++  I+K
Sbjct: 113 GKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEK 145


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 598 RTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDD---PFTRRHTKPVMNFKSQS 654
           +TS   +I   NN N K  + ++ K + +E    K+K+D+   P  ++  K  +  +S+ 
Sbjct: 242 KTSQSIAIPLWNNPNLKELIASSRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKESKD 301

Query: 655 SRSQEL 660
           S+ Q +
Sbjct: 302 SKQQNV 307


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 575 ELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKK 634
           EL+ +L  +   L++ ANQ  K++T     +S  NN  R  N  ++  +I  + K++++K
Sbjct: 242 ELIQELKHEGSRLKQAANQKRKSKT-----VSSKNNFQRLQN--SSLHSIFLDPKQLEQK 294

Query: 635 TDDPFTRRHTKPVMNFKSQSSRSQELI 661
             +   R++   ++NF   S++   +I
Sbjct: 295 AQEAEERKNV--LLNFDRTSAQRTRII 319


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 9/120 (7%)

Query: 523 EVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGD---DELVMD 579
           E+ +     F+EE++ K+              +   ++L    D+ + R +   DE+   
Sbjct: 75  EISEEPQKLFQEENV-KVYIYDSAISLSSVRASFPISELGIRMDIIKARAEPREDEIRAS 133

Query: 580 LNSKI-EELEERANQL--DKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTD 636
            +S + +E++    +L   K  T+ +  ++++  RN++LN E  E  ++E+   I+K  +
Sbjct: 134 FSSLVNKEIKRTVEELLLSKRSTNRLSLLAFM--RNQQLNYEAYETKLLEDASTIEKSLE 191


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 95  KQASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXXXX 154
           K++SSD  S   E   SE+     S+ SE++++   + EE                    
Sbjct: 160 KESSSDSSS---ESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSS 216

Query: 155 XGYDENLMGDEEDRARLAAMSEKEREQE 182
              D +   D E  +  ++  EK+R+ E
Sbjct: 217 ESGDSDSSSDSESES--SSEDEKKRKAE 242


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 93  PPKQASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXX 152
           PP Q  +DEE +E E    E     E  G E++++   +  +G                 
Sbjct: 168 PPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE--EDDGDGDGEGDGDGEGENDGKGS 225

Query: 153 XXXGYDENLMGDEEDRARLAAMSEKEREQE 182
                +E  + +EE+ + LA  S  E + E
Sbjct: 226 EEEEEEEIDIEEEEEESALANASAAEEKPE 255


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 95  KQASSDEESKETEPKRSETRKSIES---AGSEKKKDTFSEPEE 134
           K  SS +E+    PK  E  K +ES     SE+KK+  +E +E
Sbjct: 11  KDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKE 53


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 460 YNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTD 494
           YNL     N   +  H TQ+  F  EF+SN   +D
Sbjct: 436 YNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSD 470


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 309 DDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSES 363
           D+K+     + RA R S   +   D+EAD +   + ++V      ++ D+   ES
Sbjct: 635 DEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDES 689


>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
           activity |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 133

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 560 QLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLN-VE 618
           QL    DV +   D E + +L     ELE+   +L  T + +I S  Y      KLN ++
Sbjct: 15  QLDNVEDVLKPLKDAESIFELAEGKSELEQA--KLYITMSYAINSTLY---SFYKLNGID 69

Query: 619 TAEKAIMEEVKRIK 632
            +E+ +M+E++R+K
Sbjct: 70  ASERPVMQELQRVK 83


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 583 KIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEV--KRIKKKTDDPFT 640
           K++ LE R+ + DK   S  +    +  +N +L  + A+K   +E+  K++ +  D    
Sbjct: 9   KLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68

Query: 641 RRHTKPVMNFKSQSSRSQ 658
                P    KS+  + +
Sbjct: 69  SVSNPPHKTLKSKRQKGK 86


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/89 (22%), Positives = 40/89 (44%)

Query: 531 EFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEER 590
           +F +E+IE+   + E     P   A ++    KER+   L+   +       K  +LEE 
Sbjct: 2   DFLKEEIERKRRQLEGTSELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRKLEEE 61

Query: 591 ANQLDKTRTSSIQSISYINNRNRKLNVET 619
             + ++ +    +  +  ++RN +L  ET
Sbjct: 62  RLKYEEKKLRISRLANKESSRNEELLTET 90


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 589 ERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDDPFTRRH 643
           ++   L+ T  SS  S+ Y N +  K   E     I E V++I KK  +PF R+H
Sbjct: 935 QKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPF-RKH 988


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 524 VKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSK 583
           +  A  +EFKE  +E+     E+F+     Y   +T ++  R VA L   D+ + D+   
Sbjct: 9   IPPAQFFEFKELSMEEAQGHLEKFQEAIAKYKFMETSVV--RRVASL---DDKIPDIRKT 63

Query: 584 IEELEERANQLDKTRTSSIQSISY-INNR-NRKLNVETAEKAIM 625
           ++ +     Q  K R     +++Y +N+  N K  VE  +   +
Sbjct: 64  LQSV-----QFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYL 102


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 562 MKERDVAQLRGDDELVM--DLNSKI-----EELEERANQLDKTRTSSIQSISYINNRNRK 614
           MK   V +    D  +M  DL S+I     E+L+E    +   +T S+ SIS+ ++ +RK
Sbjct: 156 MKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKSLDSISHSSSSSRK 215

Query: 615 LNVE 618
            + E
Sbjct: 216 SSTE 219


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 507 ANKKPPTMDFVRNKINEVKQALMYEFK---EEDIEKIVAEKERFRSHPTNYAMKKTQ 560
           AN   P       K NE +   M E     ++DI + ++ K+  RSH T+ A +++Q
Sbjct: 119 ANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPERLSTKKGNRSHTTSNAKRRSQ 175


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 508 NKKPPTMDFVRNKINEVKQ-ALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERD 566
           N++  +++ VR  + +    ++ Y+ ++E +E  +++   F +   +YA+K+ + + E D
Sbjct: 265 NREFKSLEAVRAHMQQKGHTSIAYDTEDEQLE--LSDFYDFTTSYPDYAVKQDETVVEED 322

Query: 567 VAQLRGDDELVMD--LNSKIEELE 588
            +   GD E V D   NS ++ LE
Sbjct: 323 GSSGEGDWEDVSDDSDNSSLDSLE 346


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/64 (20%), Positives = 32/64 (50%)

Query: 533 KEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERAN 592
           KE+ ++K  A++ER R        ++ +  +     +LR  +++      ++E+LE+   
Sbjct: 76  KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERI 135

Query: 593 QLDK 596
           +L +
Sbjct: 136 RLQE 139


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,714
Number of Sequences: 5004
Number of extensions: 92400
Number of successful extensions: 377
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 52
length of query: 763
length of database: 2,362,478
effective HSP length: 78
effective length of query: 685
effective length of database: 1,972,166
effective search space: 1350933710
effective search space used: 1350933710
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)

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