Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000069-TA|BGIBMGA000069-PA|IPR004343|Plus-3
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 145 2e-35
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 40 0.002
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 35 0.048
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.26
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 32 0.34
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.34
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 31 0.45
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 1.0
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 30 1.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 1.0
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 30 1.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 1.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 1.4
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 30 1.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 1.8
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 29 1.8
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 29 2.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 2.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 3.2
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 4.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 4.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 4.2
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 28 4.2
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 4.2
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 28 4.2
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 28 5.6
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 5.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 5.6
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 5.6
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 27 7.4
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 7.4
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 7.4
SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a... 27 7.4
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 7.4
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 27 7.4
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 9.7
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 27 9.7
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 9.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 9.7
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 9.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 9.7
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 145 bits (351), Expect = 2e-35
Identities = 68/231 (29%), Positives = 128/231 (55%), Gaps = 3/231 (1%)
Query: 404 INKLRLSRFKLERLVHLPFFTRVVTGCFVRIGIGNNNGNPVYRVAEIIDVHETGKVYNLG 463
+N +RL R + ++ P F VTGCFVR+ IG +G VYR+ ++ + E+ K Y +
Sbjct: 220 LNAIRLGRKHVAEYMYHPIFESTVTGCFVRVKIGERDGQGVYRLCQVKGILESRKPYRVD 279
Query: 464 NTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTMDFVRNKINE 523
T + HG R F + +SN+ F+D +F +W+ + + P+ +FV+ K+N+
Sbjct: 280 GVLTKVSLECFHGRSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDKLSMPSKNFVQRKLND 339
Query: 524 VKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSK 583
++ Y E+++ I+ K+ P+N A +KT+L + R A + G+ ELV +++ +
Sbjct: 340 LRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAAYVAGNAELVKEIDDQ 399
Query: 584 IEELEERANQLDKTRTSSIQSISYINNRNRKLN---VETAEKAIMEEVKRI 631
+ LEE + ++ S++ ++ +N RNR+ N + AE+ + EE +R+
Sbjct: 400 LNTLEELSMGSNQNSNSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRL 450
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 159 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 199
E DE DRA++ AM+E ERE +F+R E + R E+
Sbjct: 77 EGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERREL 117
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 39.5 bits (88), Expect = 0.002
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 498 HKWYKALKDANKKPPTMDF-VRNKINEVKQALMYEFKEEDIEKIVAEKERF-RSHPTNYA 555
HK K + ++ + P D+ V ++++++ + +D+ A E + RS PT+ A
Sbjct: 520 HK-LKMVDRSSAELPNFDYLVSDQVHKIVEINDEHADCDDVNFSTASFEIYERSIPTHGA 578
Query: 556 MKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKL 615
+ +++K RD + L DDE+ DLNS + + NQ T +S+ Q ISY N +
Sbjct: 579 DSERKILK-RD-SLLNEDDEIFNDLNS---DKTIKTNQATSTSSSNTQEISYTGTLNDNI 633
Query: 616 N 616
N
Sbjct: 634 N 634
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 34.7 bits (76), Expect = 0.048
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 504 LKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMK 563
+K N+K ++ + ++ +++ Q L+ E EE EK+ AE++ F ++ + +KK L +
Sbjct: 196 MKQINEKEEKIEEISDETDKL-QKLLRELDEEK-EKVYAEEQEFYNNLNQFQIKKLSLER 253
Query: 564 ERDVAQL 570
+ D A L
Sbjct: 254 QYDCANL 260
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 534 EEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGD-DELVMDLNSKIEELEERAN 592
EE + + A KE + + +Q + E + A L + DEL+ +N K E++EE ++
Sbjct: 152 EEMSKTLRALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEISD 211
Query: 593 QLDK 596
+ DK
Sbjct: 212 ETDK 215
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 32.3 bits (70), Expect = 0.26
Identities = 26/116 (22%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 521 INEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDL 580
+++++++L + K E I + EK++ + K QL E+ + Q+ D L+
Sbjct: 498 LDDIRKSL--QGKTEGISNAIEEKQKAMAPALE---KINQLTSEKQILQVELD-MLLNKE 551
Query: 581 NSKIEELEERANQLDKTRTSSIQSISYINNRNRKL-NVETAEKAIMEEVKRIKKKT 635
N I ++E + LDK R + ++ + ++++ + L +++ +K + + ++R KK+T
Sbjct: 552 NDLINDVESSQSSLDKLRNDAEENRNILSSKLKVLSDLKGEKKDVSKNIER-KKET 606
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 563 KERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEK 622
+ER + QL+ D + + + N + L+ + + +DK +++I+ INN ++T +
Sbjct: 870 EERRILQLKSDLKSIRNNNERKRNLQNKISNMDK----EVEAIN-INNEGLVTEIKTLQD 924
Query: 623 AIME 626
IME
Sbjct: 925 KIME 928
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 31.9 bits (69), Expect = 0.34
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 501 YKALKDANKKPPTMDFVRNKINEVK--QALMYEFKEEDIEKIVAEKERFRSHPTNYAMKK 558
+ A+K P T++F+R+++ + K +A + E ++ V E + SH K
Sbjct: 122 FYAIKGREASPQTVEFLRSQLEKCKIVEASKFLRGEAPLDIKVPNTEYYASHFPKIEEKN 181
Query: 559 TQLMKERDVAQLRGDDELVMDLNSKIEELEER-ANQLDKTRTSSIQSISYINNRNRKLNV 617
Q A++ D + DL K R A L K+ TS +SI+ I +K+ V
Sbjct: 182 YQYAIYLSFAEIYND--RIFDLLEKASFFGHRHALSLKKSSTSDKKSIAGI----QKVFV 235
Query: 618 ETAEKA--IMEEVKRIKKKT 635
+A ++++V +++K T
Sbjct: 236 SNTTEAYKLIQKVLQLRKST 255
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 31.9 bits (69), Expect = 0.34
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 455 ETGK-VYNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTDGEFHKWYKAL--KDANKKP 511
E GK + + G + F RH T + + V+ G +H K K + K
Sbjct: 8 ENGKAIVSSGVLNSVSAFVRRHRTF--VYTIGAVAVFATVGGVYHVQQKKASHKRSKKLK 65
Query: 512 PTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLR 571
D +K+NE K KEED++ K+ + A KK + K++ A+
Sbjct: 66 AHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAAAAAKKKKKNKKKVKAKKV 125
Query: 572 GD---DELVMDLNSKIEELEERANQLDKTRT 599
GD D++ + + K EERA + +T
Sbjct: 126 GDSSVDKIATEESVKSMTKEERAKLAAELKT 156
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 31.5 bits (68), Expect = 0.45
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 526 QALMYEFKEEDIEKIVAEKERFRSHPTNYAMKK-TQLMKERDVAQLRGDDELVMDLNSKI 584
+AL+ +FK E +E + + +S N+ ++K T L +E + LR D D +++
Sbjct: 825 RALLDQFKSEFLEMSDEDFSKHKSSLINFMLEKHTNLKEESSMYWLRICDGF-YDF-TRL 882
Query: 585 EELEERANQLDKTRTSS--IQSISYINNRNRKLNVETAEKAIMEEVKRIKKKT 635
E+ E + + K S I +I Y +K++V + +EV I T
Sbjct: 883 EKQAEIVSTITKDEFYSFFINNIHYEGENTKKISVHVVSQRCEDEVYEIPNVT 935
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 30.3 bits (65), Expect = 1.0
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 519 NKINEVKQALMYEFKEEDIEKIVAEKE----RFRSHPTNYAMKKTQLMKERDVAQLRGDD 574
N+IN K+ L KE+D++K + E + H + + T+L + + R
Sbjct: 217 NEIN--KRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFK- 273
Query: 575 ELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEE-VKRIK 632
E S I++ +E++++ KT + + IN+ +K++ EK ++EE V+R K
Sbjct: 274 EFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVSDIALEKQLLEEAVERYK 332
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 164 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWE 198
DE R ++ + +KER++E F ERRD + +W+
Sbjct: 308 DESRRKKIELLEKKERDEEQFLEKERRDTAR-KWD 341
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 502 KALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIV---AEKERFRSHPTNYAMKK 558
K+ + N ++D +RN++NE++ L ++ +K V +E + R Y +
Sbjct: 145 KSFVELNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQ 204
Query: 559 TQLMKERDVAQLRGDD 574
+L+ ERD + DD
Sbjct: 205 RKLIAERDDEKTALDD 220
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 536 DIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLD 595
D EK +K+ +S + A+ + D + D E V L I++ ++R +
Sbjct: 126 DYEKYDKDKKEEKSKSRSVALYDEA--ERLDWVSNKPDKEHVERLVESIKKQDQRRLKNT 183
Query: 596 KTR-TSSIQSISYINNRNRKLNVE 618
K R T I++IN RNRK N++
Sbjct: 184 KRRGTDEEDHITFINERNRKFNLK 207
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 543 EKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQ--LDKTRTS 600
E R+R + K +L K+ DVA+ ++ D S +EL+ + N+ L + +
Sbjct: 1268 ELTRWRDTFYDCIQKIEELEKQIDVAR-----DVAEDTKSLGKELQNKINEKNLAEQKVE 1322
Query: 601 SIQSISYINNRNRKLNVETAEKAIMEE 627
+QS S+ N+ L + A+KAI+++
Sbjct: 1323 ELQSQSFTKNKEVDLLRKKAQKAILKQ 1349
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 505 KDANKKPPTMDFVRNKINEVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKE 564
+D ++ ++ + ++ + K+ L KE D + V K R + +KT E
Sbjct: 532 EDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENE 591
Query: 565 RDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKA- 623
++ + E V L +I +L ER N + + + N K ++ K
Sbjct: 592 ESISLFK---EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTS 648
Query: 624 -IMEEVKRIKKKTD 636
++E++K + + D
Sbjct: 649 NLLEQLKMTEAEVD 662
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 29.9 bits (64), Expect = 1.4
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 22/157 (14%)
Query: 522 NEVKQALMY--EFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMD 579
NE +L Y ED+ K V + R P Y +KK+Q E D ++L D+E V+D
Sbjct: 73 NENPSSLKYLSSINPEDLGKKVEKGPR----PDIYDLKKSQQF-ELDTSRLSSDEESVLD 127
Query: 580 LNSKIE-----ELEERA---------NQLD-KTRTSSIQSISYINNRNRKLNVETAEKAI 624
+ E EL R N+L KT+ +Q++ N + E+ +A
Sbjct: 128 YSKDSEDEQDYELRPRVSSSWNNESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEAS 187
Query: 625 MEEVKRIKKKTDDPFTRRHTKPVMNFKSQSSRSQELI 661
+E IK + + P + K Q +E +
Sbjct: 188 LEIDSDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEAL 224
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 706 SSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKR 749
S +S S H FE+++ + KS + K T+K K PKR
Sbjct: 716 SEPSSAVSTHSFEVHLSMPGTQIKSANLAEKMETSKHKVFNPKR 759
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 277 PGEILDES-KDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAE 335
PG + + P ER ASP+ T ++ ++ + ++L+ + E
Sbjct: 189 PGNVTGTTFSSQAPEERIASPI---STSSPESLTNQSSSLQSSLQTSSMAPRNLLDQSTE 245
Query: 336 ADLIGGSSKQTVKLKASDIYSDDSGSES 363
D++ G+S + V+++ + + + GS++
Sbjct: 246 KDIVVGASDELVRIELTKLSKEAGGSKT 273
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 29.1 bits (62), Expect = 2.4
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 13/149 (8%)
Query: 480 RAFRLEFVSNQEFTDGEFHKWYKALKDANKKPPTM--DFVRNKINEVKQAL-MYEFKE-- 534
R F E + ++F D E L+ N+ P + ++R +N L +Y K
Sbjct: 237 RTFSCELFTTEDFEDKE------TLELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKS 290
Query: 535 --EDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERAN 592
E++ K E+ R+ P N ++ + ++ L LN K E N
Sbjct: 291 LFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIESEFSSYASLSEVLNRKASEDLLELN 350
Query: 593 QLDKTRTSSIQSISYINNRNRKLNVETAE 621
++K + + + R+ NVETA+
Sbjct: 351 FMEKASSGTNSVFNASGERSESANVETAQ 379
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 487 VSNQEFTD--GEFHKW--YKALKDANKKPPTMDFVRNKINEVKQALMYEFKEEDI--EKI 540
++ QEF+D G+F + +KD N KP FV +E Q + E +++ +K+
Sbjct: 272 ITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKL 331
Query: 541 VAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEE 586
+ + + K+ + MK + + +G + + +L ++++
Sbjct: 332 YVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 3.2
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 517 VRNKINEVKQALMYEFKEEDI----EKIVAEKERFRSHPTNYAMKKTQLMKE-RDVAQLR 571
+R+++ KQ E KE +I ++VAEKE+ + N +K+Q +KE + AQ
Sbjct: 1573 LRSQLESTKQYYEKE-KETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKN 1631
Query: 572 GDDELVMDLNSKI-EELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKR 630
+ +++ I +++EE+ + ++ + K + EK + +
Sbjct: 1632 SSENTHDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSKAKISVYEKKTRDLQNK 1691
Query: 631 IK--KKTDDPFTRRHTKPVMNFKSQSS 655
I ++T + ++ + P +S SS
Sbjct: 1692 ITQLEETIENLNKQLSNPEKTDESTSS 1718
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/78 (17%), Positives = 38/78 (48%)
Query: 564 ERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKA 623
+ ++ + GD + + DL+ ++EL + + + ++ I+ ++ + E+A
Sbjct: 128 DAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQA 187
Query: 624 IMEEVKRIKKKTDDPFTR 641
I+E+V + +T P +
Sbjct: 188 IIEKVYQYLTETKQPIRK 205
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 525 KQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKI 584
KQ + E + EK ++KE ++ + Q + + AQ +D+L+ + + +
Sbjct: 521 KQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDAL 580
Query: 585 EELEERANQLDKTRTSSIQS 604
ELEE QL K++ Q+
Sbjct: 581 SELEEDYRQLKKSKKRKNQA 600
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/86 (18%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 580 LNSKIEELEE-RANQLDKTRTSSIQSISYINN-----RNRKLNVETAEKAIMEEVKRIKK 633
+N ++++L +A+ T+ ++++ + N + K E +K I E ++++ +
Sbjct: 264 VNDQLQQLRSGKASTSPSTKDTNMRLVEGHNEETLALQRGKYTQEEVDKLIQERMEKVAE 323
Query: 634 KTDDPFTRRHTKPVMNFKSQSSRSQE 659
++ +HT+ + FK+ +R E
Sbjct: 324 DLHAQYSAKHTQKINAFKANYARKYE 349
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 563 KERDVAQLRGDDELVMDLNSKIEEL-EERANQLDKTRTSSIQSISYINNR 611
+ER+ LRGD E+V L +++ E+ EE NQ+++ + IS I R
Sbjct: 1007 EERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGR 1056
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 541 VAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTS 600
+ EKE ++ N +K+ +E+D + G+ +V N K + +++ Q K + +
Sbjct: 57 ILEKE---NNAINSEAEKSVSEEEQDEPLVEGESPIV-STNKKAKNKKKKKKQQKKKKVT 112
Query: 601 SIQSISYINNRNRKLNVETAEKAIMEEVKRIKK 633
+ + ++ N KL + K I +++ I+K
Sbjct: 113 GKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEK 145
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 598 RTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDD---PFTRRHTKPVMNFKSQS 654
+TS +I NN N K + ++ K + +E K+K+D+ P ++ K + +S+
Sbjct: 242 KTSQSIAIPLWNNPNLKELIASSRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKESKD 301
Query: 655 SRSQEL 660
S+ Q +
Sbjct: 302 SKQQNV 307
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 575 ELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKK 634
EL+ +L + L++ ANQ K++T +S NN R N ++ +I + K++++K
Sbjct: 242 ELIQELKHEGSRLKQAANQKRKSKT-----VSSKNNFQRLQN--SSLHSIFLDPKQLEQK 294
Query: 635 TDDPFTRRHTKPVMNFKSQSSRSQELI 661
+ R++ ++NF S++ +I
Sbjct: 295 AQEAEERKNV--LLNFDRTSAQRTRII 319
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 5.6
Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 523 EVKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGD---DELVMD 579
E+ + F+EE++ K+ + ++L D+ + R + DE+
Sbjct: 75 EISEEPQKLFQEENV-KVYIYDSAISLSSVRASFPISELGIRMDIIKARAEPREDEIRAS 133
Query: 580 LNSKI-EELEERANQL--DKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTD 636
+S + +E++ +L K T+ + ++++ RN++LN E E ++E+ I+K +
Sbjct: 134 FSSLVNKEIKRTVEELLLSKRSTNRLSLLAFM--RNQQLNYEAYETKLLEDASTIEKSLE 191
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 95 KQASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXXXX 154
K++SSD S E SE+ S+ SE++++ + EE
Sbjct: 160 KESSSDSSS---ESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSS 216
Query: 155 XGYDENLMGDEEDRARLAAMSEKEREQE 182
D + D E + ++ EK+R+ E
Sbjct: 217 ESGDSDSSSDSESES--SSEDEKKRKAE 242
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 93 PPKQASSDEESKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXX 152
PP Q +DEE +E E E E G E++++ + +G
Sbjct: 168 PPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE--EDDGDGDGEGDGDGEGENDGKGS 225
Query: 153 XXXGYDENLMGDEEDRARLAAMSEKEREQE 182
+E + +EE+ + LA S E + E
Sbjct: 226 EEEEEEEIDIEEEEEESALANASAAEEKPE 255
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 95 KQASSDEESKETEPKRSETRKSIES---AGSEKKKDTFSEPEE 134
K SS +E+ PK E K +ES SE+KK+ +E +E
Sbjct: 11 KDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKE 53
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 460 YNLGNTRTNKGFKLRHGTQDRAFRLEFVSNQEFTD 494
YNL N + H TQ+ F EF+SN +D
Sbjct: 436 YNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSD 470
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 309 DDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSES 363
D+K+ + RA R S + D+EAD + + ++V ++ D+ ES
Sbjct: 635 DEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDES 689
>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
activity |Schizosaccharomyces pombe|chr 3|||Manual
Length = 133
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 560 QLMKERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLN-VE 618
QL DV + D E + +L ELE+ +L T + +I S Y KLN ++
Sbjct: 15 QLDNVEDVLKPLKDAESIFELAEGKSELEQA--KLYITMSYAINSTLY---SFYKLNGID 69
Query: 619 TAEKAIMEEVKRIK 632
+E+ +M+E++R+K
Sbjct: 70 ASERPVMQELQRVK 83
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 583 KIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEV--KRIKKKTDDPFT 640
K++ LE R+ + DK S + + +N +L + A+K +E+ K++ + D
Sbjct: 9 KLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68
Query: 641 RRHTKPVMNFKSQSSRSQ 658
P KS+ + +
Sbjct: 69 SVSNPPHKTLKSKRQKGK 86
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 531 EFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEER 590
+F +E+IE+ + E P A ++ KER+ L+ + K +LEE
Sbjct: 2 DFLKEEIERKRRQLEGTSELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRKLEEE 61
Query: 591 ANQLDKTRTSSIQSISYINNRNRKLNVET 619
+ ++ + + + ++RN +L ET
Sbjct: 62 RLKYEEKKLRISRLANKESSRNEELLTET 90
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 589 ERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDDPFTRRH 643
++ L+ T SS S+ Y N + K E I E V++I KK +PF R+H
Sbjct: 935 QKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPF-RKH 988
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 27.1 bits (57), Expect = 9.7
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 524 VKQALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSK 583
+ A +EFKE +E+ E+F+ Y +T ++ R VA L D+ + D+
Sbjct: 9 IPPAQFFEFKELSMEEAQGHLEKFQEAIAKYKFMETSVV--RRVASL---DDKIPDIRKT 63
Query: 584 IEELEERANQLDKTRTSSIQSISY-INNR-NRKLNVETAEKAIM 625
++ + Q K R +++Y +N+ N K VE + +
Sbjct: 64 LQSV-----QFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYL 102
>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 256
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 562 MKERDVAQLRGDDELVM--DLNSKI-----EELEERANQLDKTRTSSIQSISYINNRNRK 614
MK V + D +M DL S+I E+L+E + +T S+ SIS+ ++ +RK
Sbjct: 156 MKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKSLDSISHSSSSSRK 215
Query: 615 LNVE 618
+ E
Sbjct: 216 SSTE 219
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 507 ANKKPPTMDFVRNKINEVKQALMYEFK---EEDIEKIVAEKERFRSHPTNYAMKKTQ 560
AN P K NE + M E ++DI + ++ K+ RSH T+ A +++Q
Sbjct: 119 ANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPERLSTKKGNRSHTTSNAKRRSQ 175
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 508 NKKPPTMDFVRNKINEVKQ-ALMYEFKEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERD 566
N++ +++ VR + + ++ Y+ ++E +E +++ F + +YA+K+ + + E D
Sbjct: 265 NREFKSLEAVRAHMQQKGHTSIAYDTEDEQLE--LSDFYDFTTSYPDYAVKQDETVVEED 322
Query: 567 VAQLRGDDELVMD--LNSKIEELE 588
+ GD E V D NS ++ LE
Sbjct: 323 GSSGEGDWEDVSDDSDNSSLDSLE 346
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/64 (20%), Positives = 32/64 (50%)
Query: 533 KEEDIEKIVAEKERFRSHPTNYAMKKTQLMKERDVAQLRGDDELVMDLNSKIEELEERAN 592
KE+ ++K A++ER R ++ + + +LR +++ ++E+LE+
Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERI 135
Query: 593 QLDK 596
+L +
Sbjct: 136 RLQE 139
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.127 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,714
Number of Sequences: 5004
Number of extensions: 92400
Number of successful extensions: 377
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 52
length of query: 763
length of database: 2,362,478
effective HSP length: 78
effective length of query: 685
effective length of database: 1,972,166
effective search space: 1350933710
effective search space used: 1350933710
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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