GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000069-TA|BGIBMGA000069-PA|IPR004343|Plus-3
         (763 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    27   1.4  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    26   3.2  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   4.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   4.3  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   9.8  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 169 ARLAAMSEKEREQEIFKRIERRDLMKTRWEI 199
           ARL +  E +REQE+ +R+E +   + R ++
Sbjct: 156 ARLESQQELQREQELLRRMESQQRQEQRQQL 186


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 691 ENHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVKETGPKRS 750
           E  EEAKR R E   +    L + H  + N+   L AAK    QP   + +     P+RS
Sbjct: 130 EEKEEAKR-REEKLKAQMEKLAAAHQRDRNLLNSLLAAKVAGGQPSASSRQPPTPLPRRS 188


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 582 SKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAEKAIMEEVKRIKKKTDD 637
           +K+E L    N L + +   +Q++  I+  +RK  +      ++   KRIKK   D
Sbjct: 826 NKLENL--LTNNLFRRKDELVQALQEISVEDRKRQLTNCRNEVVATEKRIKKVLTD 879


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 564  ERDVAQLRGDDELVMDLNSKIEELEERANQLDKTRTSSIQSISYINNRNRKLNVETAE-K 622
            E  +  L   D++    +S  +EL+ + + L+K +T +++++  ++    K+     E +
Sbjct: 987  EHHLKNLSDPDQIKKSGDSLAKELQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNEEFE 1046

Query: 623  AIMEEVKRIK 632
            A  ++ K+ K
Sbjct: 1047 AARKKAKKAK 1056



 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 159 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMK 194
           E  + D+ED       +E  + QEI K  E+ +LMK
Sbjct: 849 ERAVQDDEDSLETFKQAEARQRQEIEKDKEKIELMK 884


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 165 EEDRARLA--AMSEKEREQEIFKRIERRDLMKTRWE 198
           EE+RAR A  A  E+E+E+E+ ++ ER    K + E
Sbjct: 454 EEERAREAREAAIEREKERELREQREREQREKEQRE 489


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,283
Number of Sequences: 2123
Number of extensions: 16937
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 7
length of query: 763
length of database: 516,269
effective HSP length: 69
effective length of query: 694
effective length of database: 369,782
effective search space: 256628708
effective search space used: 256628708
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)