Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000068-TA|BGIBMGA000068-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   2e-16
SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)           59   8e-09
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.029
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.5  
SB_30501| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.5  
SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)                    30   4.5  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 7/128 (5%)

Query: 46  DFIVIGSG-VGAVIANRLTENEDVRVLLIEAG-KNPSVESMLPGLFIL-LQNSYQDWNYV 102
           D+++ G+G  G V+ANRL+ + D +VLL+EAG K+ + +  +P   I  L +   +W Y 
Sbjct: 165 DYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYYH 224

Query: 103 SEPEEATKNQQVGAYRTSAGKCLGGSSNINHFIHLRGDPCDFDSWAAYLKDESWSYKNVL 162
           + P++   N+ +   R   G+  GGSS++N  +++RG   D+D W      + WSY + L
Sbjct: 225 TAPQKHMNNRVMYCPR---GRVWGGSSSLNAMVYIRGHAYDYDRWERE-GAQGWSYADCL 280

Query: 163 PYFRKSET 170
           PYFRKS+T
Sbjct: 281 PYFRKSQT 288


>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
          Length = 79

 Score = 59.3 bits (137), Expect = 8e-09
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 517 TIFHQTSTCAMG----SVVDSNMQVYGVENLRVIDASTMPNITRANTLAASIMMAEKMSD 572
           TIFH   TC MG    +VVD  ++V G+  LR++DAS MP IT  NT + +IM+AEK + 
Sbjct: 15  TIFHPVGTCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAEKAAA 74

Query: 573 VI 574
            I
Sbjct: 75  FI 76


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 37.5 bits (83), Expect = 0.029
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 42 GDCFDFIVIGSGV-GAVIANRLTENEDVRVLLIEAG 76
          GD +DFI+ G G  G ++ANRLT +   RVL++EAG
Sbjct: 9  GD-YDFIIAGGGTAGCILANRLTADGRHRVLMLEAG 43


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 8/64 (12%)

Query: 14   TYLPLETATTIITMAGLFKWPPQATVNDGDCFDFIVIGSGV-GAVIANRLTENED-VRVL 71
            TY+ +E AT  I+  GL +             D I+IG+GV G + AN LTE +  ++VL
Sbjct: 2082 TYV-IEDATAFISHGGLAERAESVCA-----VDVIIIGAGVSGLIAANVLTEQDQYIKVL 2135

Query: 72   LIEA 75
            ++EA
Sbjct: 2136 VLEA 2139


>SB_30501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 432 PESRGYVKLRSADPNDDPIISQSFYSNAKDFDNMKKYVKHFLTVYNSSYFREINAEVADP 491
           P+   + K R  + + D + ++SF  +    + +++Y   F  V    YF+E  A+    
Sbjct: 232 PQKFCWQKTRIVEDSPDAVFNESFVISGFSKERIREYKLSFCVVNYHEYFKERYAD---- 287

Query: 492 GLDECGEMSLDNEDYLECYIKGMTVTIFHQTSTCAMGSVVDSNMQVYGVENLRVI 546
             D  GE+     + L+      TV++  +  TCA+  V    M+V  VE + V+
Sbjct: 288 --DVIGEIHFPLSE-LKVPDDKSTVSL-TRGRTCALWQVARVGMRVARVEMMVVV 338


>SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)
          Length = 554

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 210 IGVPSVLDLNTNNTVGFTESSFIIGNGRRQSTSQAYLNNLKRDNLY 255
           +G+P V +L+T+  +  + S  I+  G R  T + Y + LKR N+Y
Sbjct: 264 VGLPLVRELHTSQGLSASASEVIL-QGWRSGTQKQYHSYLKRWNVY 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,808
Number of Sequences: 59808
Number of extensions: 826872
Number of successful extensions: 1775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1769
Number of HSP's gapped (non-prelim): 6
length of query: 580
length of database: 16,821,457
effective HSP length: 86
effective length of query: 494
effective length of database: 11,677,969
effective search space: 5768916686
effective search space used: 5768916686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)