GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000068-TA|BGIBMGA000068-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
         (580 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   5.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   7.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   7.7  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 249 LKRDNLYVLTETVAEKIIFEDNVAVGVILRLGSGEKITVYANREVIVSAGTFNSPKLLML 308
           ++R  LY     +   ++      +G  L   SGEK+T+     +++S   F +     L
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVT--ILLSLTVFLNLVAETL 264

Query: 309 SGIGPAEELQKFGIDVIKDLPVGKDMQDHFAVLLLNKLERSIEISQIPQ 357
             +  A  L     + I  +     +     V++LN   R+ +I ++PQ
Sbjct: 265 PQVSDAIPLLGTYFNCIMFMVASSVV---LTVVVLNYHHRTADIHEMPQ 310


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 249 LKRDNLYVLTETVAEKIIFEDNVAVGVILRLGSGEKITVYANREVIVSAGTFNSPKLLML 308
           ++R  LY     +   ++      +G  L   SGEK+T+     +++S   F +     L
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVT--ILLSLTVFLNLVAETL 264

Query: 309 SGIGPAEELQKFGIDVIKDLPVGKDMQDHFAVLLLNKLERSIEISQIPQ 357
             +  A  L     + I  +     +     V++LN   R+ +I ++PQ
Sbjct: 265 PQVSDAIPLLGTYFNCIMFMVASSVV---LTVVVLNYHHRTADIHEMPQ 310


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 249 LKRDNLYVLTETVAEKIIFEDNVAVGVILRLGSGEKITVYANREVIVSAGTFNSPKLLML 308
           ++R  LY     +   ++      +G  L   SGEK+T+     +++S   F +     L
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVT--ILLSLTVFLNLVAETL 264

Query: 309 SGIGPAEELQKFGIDVIKDLPVGKDMQDHFAVLLLNKLERSIEISQIPQ 357
             +  A  L     + I  +     +     V++LN   R+ +I ++PQ
Sbjct: 265 PQVSDAIPLLGTYFNCIMFMVASSVV---LTVVVLNYHHRTADIHEMPQ 310


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 48  IVIGSGVGAVIANRLTENEDVRVLLIEAGKNP 79
           I++G+G G  +      N D+ ++L   G +P
Sbjct: 164 IILGNGTGVQLVPTRLANGDIALVLPTQGASP 195


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 249 LKRDNLYVLTETVAEKIIFEDNVAVGVILRLGSGEKITV 287
           ++R  LY     +   ++      +G  L   SGEK+T+
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL 245


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 249 LKRDNLYVLTETVAEKIIFEDNVAVGVILRLGSGEKITV 287
           ++R  LY     +   ++      +G  L   SGEK+T+
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTL 245


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,856
Number of Sequences: 317
Number of extensions: 6368
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 580
length of database: 114,650
effective HSP length: 60
effective length of query: 520
effective length of database: 95,630
effective search space: 49727600
effective search space used: 49727600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)