GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000068-TA|BGIBMGA000068-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    31   0.44 
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    31   0.58 
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    30   0.77 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    29   1.3  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    29   1.3  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    29   2.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   4.1  
SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|...    28   4.1  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   5.4  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   7.2  

>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)

Query: 427 IGAFHPESRGYVKLRSADPNDDP------IISQSFYSNAKDFDNMKKYVKHFLTVYNSSY 480
           I   +P SR Y K  S+DPND P        S+SFYS+   +D MK  + + L   N ++
Sbjct: 123 INGGNPYSRLYRKNPSSDPNDIPPQFHFKKKSKSFYSSM--YDKMKIRI-NILPNGNDNF 179

Query: 481 FREINAEVADPGLDECGEMSLDNEDYLECYIKGMTVTIFHQTSTCAMGSVVDSNMQV 537
            ++ N+  A   +  C   + D    L+  + G   +IF + +  +   VV+    V
Sbjct: 180 IKKRNSGFALAPI-ACYNHTSDLRKLLKHKVTGSNASIFKRINPRSRKRVVNPECSV 235


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 382 QIIGLKFTHDTPYFLLTCTVLFGLKHEICSKLNAETIGRNHLVTFIGAFHPESRGYVKLR 441
           QI+GL  + D   +   C  +  +++     +N  T      +  +   HP SR  +++ 
Sbjct: 126 QILGLGVSPDRIVYANPCKAITYVRYAASKGINLMTFDNADELYKVKQHHPNSRLLLRIS 185

Query: 442 SADPNDDPIISQSFYSNAKDFDNMKKYVKHF-LTVYNSSYFREINAEVADPG--LDECGE 498
           + D N    +S  F ++  D   +    K   L V   S+   + +   DP   LD    
Sbjct: 186 TDDSNSLCRLSLKFGASLDDTGKLLDIAKSLELNVVGVSF--HVGSGSYDPSAFLDAIQR 243

Query: 499 MSLDNEDYLECYIKGMTVTI---FHQTSTCAMGSVVDSNMQVYGVENLRVIDASTMPNIT 555
                +  LE       + I   F   S   +  ++ S +  Y   ++RVI       ++
Sbjct: 244 SRQVFDQGLERGFNFDLLDIGGGFMNDSFDGVADLIRSALDTYFDPSIRVISEPGRFFVS 303

Query: 556 RANTLAASIMMAEKMSDVIKNKY 578
            + TLA +++   K+ D  K  Y
Sbjct: 304 SSFTLAVNVIAKRKLDDEEKVMY 326


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 293 VIVSAGTFNSPKLLMLSGIGPAEELQKFGIDVIKDLPVGKDMQDHFAVLLLNKLERSIEI 352
           ++ S   F++ K +M S + PA +   F  D+ + LP+ +D+  +   L L      I+ 
Sbjct: 84  ILASLFLFSTDKDIMNSSLNPASQAYTF--DLGRTLPISEDILGYRKPLSLTDASNRIDA 141

Query: 353 SQIPQLTRLAFPV 365
           SQ+ +    +F +
Sbjct: 142 SQLNEKENDSFTI 154


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 51  GSGVGAVIANRLTENEDVRVLLIEAGKNPSVESMLPGLFILLQNS 95
           G  + +++A+ L+EN+D  ++LI+ GKN     ++P LF  L +S
Sbjct: 696 GLEILSLLADLLSENKDANLMLIQEGKN----HVVPPLFAKLLSS 736


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 464

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 45 FDFIVIGSGVGAVIANRLTENEDVRVLLIEA 75
          FD++VIG G G + + R       +V LIEA
Sbjct: 8  FDYLVIGGGSGGLASARRAAKHGAKVALIEA 38


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 185 GVDGPVIITRQPDDSTRNIMESFEEIGVPSVL 216
           GVD   + TR P  S RN+ E  +  G+ SVL
Sbjct: 71  GVDASNLATRFPAHSIRNVKELLDTAGLESVL 102


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 156 WSYKNVLPY--FRKSETVQDEDILKYYANFHGVDG-----PVIITRQPDDSTRNIMESFE 208
           WS KN+ P   + KS++     +   + + H +        +I+++QP      + ++F 
Sbjct: 658 WSAKNLRPKKPYHKSQSYLSYLLQLGHIDLHKIGAFQATQILIVSKQPSPEAEELEDTFR 717

Query: 209 EIGVPSVLDLNTNNTVGFTESSFIIGN 235
           E  +P+   L    ++  +++ F+  N
Sbjct: 718 EAAIPTFRGLEIPESLFLSQNVFVFLN 744


>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
           Arc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 466 KKYVKHFLTVYNSSYFREINAEVADPGLDECGEMSLDNEDYLECY 510
           ++ +KH L  +   +  E++AE+++  L   G   L  E YL C+
Sbjct: 124 EEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 182 NFHGVDGPV----IITRQPDDSTRNIMESFEEIGVPSVLDLNTNNTVGFTESS 230
           N     GPV     +  Q D +T N+M S  ++G  +    N NN+   T SS
Sbjct: 179 NTASTSGPVPHDMTVLPQTDSNTSNLMSSGSQLGSFATASTNGNNSTTTTTSS 231


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 362 AFPVLLGGINLDGSKCCPDYQIIG 385
           AF  L+ G N+D +KCCP  Q  G
Sbjct: 85  AFQQLVVGSNVDVNKCCPWAQCYG 108


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,586
Number of Sequences: 5004
Number of extensions: 123672
Number of successful extensions: 329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 12
length of query: 580
length of database: 2,362,478
effective HSP length: 77
effective length of query: 503
effective length of database: 1,977,170
effective search space: 994516510
effective search space used: 994516510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)