GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000068-TA|BGIBMGA000068-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
         (580 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...   231   7e-60
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...   208   4e-53
BC044787-1|AAH44787.1|  527|Homo sapiens monoamine oxidase A pro...    33   2.1  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score =  231 bits (564), Expect = 7e-60
 Identities = 170/555 (30%), Positives = 272/555 (49%), Gaps = 39/555 (7%)

Query: 43  DCFDFIVIGSG-VGAVIANRLTENEDVRVLLIEAG--------KNPSVESMLPGLFIL-L 92
           D + ++V+G+G  G V+A RLTE+   RVLL+EAG        K  S +  +P   +  L
Sbjct: 39  DEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKIHMPAALVANL 98

Query: 93  QNSYQDWNYVSEPEEATKNQQVGAYRTSAGKCLGGSSNINHFIHLRGDPCDFDSWAAYLK 152
            +   +W Y +E +     + +   R   G+  GGSS++N  +++RG   D++ W     
Sbjct: 99  CDDRYNWCYHTEVQRGLDGRVLYWPR---GRVWGGSSSLNAMVYVRGHAEDYERWQRQ-G 154

Query: 153 DESWSYKNVLPYFRKSETVQDEDILKYYANFHGVDGPVIITRQPDDSTRN--IMESFEEI 210
              W Y + LPYFRK+   Q  ++    + + G DGP+ ++R   +   +   +E+ ++ 
Sbjct: 155 ARGWDYAHCLPYFRKA---QGHELGA--SRYRGADGPLRVSRGKTNHPLHCAFLEATQQA 209

Query: 211 GVPSVLDLNTNNTVGFTESSFIIGNGRRQSTSQAYLNN-LKRDNLYVLTETVAEKIIFED 269
           G P   D+N     GF      I  G+R S + AYL+  L R NL    ET+  +++FE 
Sbjct: 210 GYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEG 269

Query: 270 NVAVGVILRLGSGEKITVYANREVIVSAGTFNSPKLLMLSGIGPAEELQKFGIDVIKDLP 329
             AVGV   + +G+    YA++EVI+S G  NSP+LLMLSGIG A++L+K GI V+  LP
Sbjct: 270 TRAVGVEY-VKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLP 328

Query: 330 -VGKDMQDHFAVLLLNKLERSIEISQIPQLTRLAFPVLLGGINLDGSKCCPDYQIIGLKF 388
            VG+++QDH  + +     R I +    +  R     L       G       +  G  F
Sbjct: 329 GVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGG--F 386

Query: 389 THDTPYFLLTCTVLFGLKHEICSKLNAETIGRNHLVTFIGAFHPESRGYVKLRSADPNDD 448
               P           L  ++       T    + V  +G     S G++KLRSA+P D 
Sbjct: 387 IRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQV-HVGPMRGTSVGWLKLRSANPQDH 445

Query: 449 PIISQSFYSNAKDFDNMKKYVKHFLTVYNSSYFREINAEVADPGLDECGEMSLDNEDYLE 508
           P+I  ++ S   D ++ +  VK    ++          +   PG      +  D E  ++
Sbjct: 446 PVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPG----SHIQSDKE--ID 499

Query: 509 CYIKGMTVTIFHQTSTCAMG------SVVDSNMQVYGVENLRVIDASTMPNITRANTLAA 562
            +++    + +H + TC MG      +VVD   +V GVENLRV+DAS MP++   N  A 
Sbjct: 500 AFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAP 559

Query: 563 SIMMAEKMSDVIKNK 577
           +IM+AEK +D+IK +
Sbjct: 560 TIMIAEKAADIIKGQ 574


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score =  208 bits (508), Expect = 4e-53
 Identities = 144/466 (30%), Positives = 229/466 (49%), Gaps = 26/466 (5%)

Query: 122 GKCLGGSSNINHFIHLRGDPCDFDSWAAYLKDESWSYKNVLPYFRKSETVQDEDILKYYA 181
           G+  GGSS++N  +++RG   D++ W        W Y + LPYFRK+   Q  ++    +
Sbjct: 13  GRVWGGSSSLNAMVYVRGHAEDYERWQRQ-GARGWDYAHCLPYFRKA---QGHELGA--S 66

Query: 182 NFHGVDGPVIITRQPDDSTRN--IMESFEEIGVPSVLDLNTNNTVGFTESSFIIGNGRRQ 239
            + G DGP+ ++R   +   +   +E+ ++ G P   D+N     GF      I  G+R 
Sbjct: 67  RYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRW 126

Query: 240 STSQAYLNN-LKRDNLYVLTETVAEKIIFEDNVAVGVILRLGSGEKITVYANREVIVSAG 298
           S + AYL+  L R NL    ET+  +++FE   AVGV   + +G+    YA++EVI+S G
Sbjct: 127 SAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEY-VKNGQSHRAYASKEVILSGG 185

Query: 299 TFNSPKLLMLSGIGPAEELQKFGIDVIKDLP-VGKDMQDHFAVLLLNKLERSIEISQIPQ 357
             NSP+LLMLSGIG A++L+K GI V+  LP VG+++QDH  + +     R I +    +
Sbjct: 186 AINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQK 245

Query: 358 LTRLAFPVLLGGINLDGSKCCPDYQIIGLKFTHDTPYFLLTCTVLFGLKHEICSKLNAET 417
             R     L       G       +  G  F    P           L  ++       T
Sbjct: 246 PLRKVCIGLEWLWKFTGEGATAHLETGG--FIRSQPGVPHPDIQFHFLPSQVIDHGRVPT 303

Query: 418 IGRNHLVTFIGAFHPESRGYVKLRSADPNDDPIISQSFYSNAKDFDNMKKYVKHFLTVYN 477
               + V  +G     S G++KLRSA+P D P+I  ++ S   D ++ +  VK    ++ 
Sbjct: 304 QQEAYQV-HVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFA 362

Query: 478 SSYFREINAEVADPGLDECGEMSLDNEDYLECYIKGMTVTIFHQTSTCAMG------SVV 531
                    +   PG      +  D E  ++ +++    + +H + TC MG      +VV
Sbjct: 363 QEALAPFRGKELQPG----SHIQSDKE--IDAFVRAKADSAYHPSCTCKMGQPSDPTAVV 416

Query: 532 DSNMQVYGVENLRVIDASTMPNITRANTLAASIMMAEKMSDVIKNK 577
           D   +V GVENLRV+DAS MP++   N  A +IM+AEK +D+IK +
Sbjct: 417 DPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQ 462


>BC044787-1|AAH44787.1|  527|Homo sapiens monoamine oxidase A
          protein.
          Length = 527

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 42 GDCFDFIVIGSGVGAVIANRLTENEDVRVLLIEA 75
          G  FD +VIG G+  + A +L    DV VL++EA
Sbjct: 11 GHMFDVVVIGGGISGLSAAKLLTEYDVSVLVLEA 44


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,528,848
Number of Sequences: 224733
Number of extensions: 3695916
Number of successful extensions: 5770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5752
Number of HSP's gapped (non-prelim): 5
length of query: 580
length of database: 73,234,838
effective HSP length: 94
effective length of query: 486
effective length of database: 52,109,936
effective search space: 25325428896
effective search space used: 25325428896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 68 (31.5 bits)