Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000067-TA|BGIBMGA000067-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin
subtype 2, IPR013098|Immunoglobulin I-set, IPR013151|Immunoglobulin
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    33   0.093
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    28   2.0  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   4.6  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   4.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   4.6  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 32.7 bits (71), Expect = 0.093
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 123 RGVDMGNYTCLLTNSVGNGTSEDNIVVNVLCEWLSFYVLSFWVVTNDLQGSGSKSQAKNV 182
           RG   G   CL    + +  S  N   ++L +W    +   W   ++ + SG++  A   
Sbjct: 608 RGFPQGQLACLNPQVLSHCLSHLNSPDSLLRQWACLCISQLWENYSEAKWSGTRDNAH-- 665

Query: 183 MRLSNYCIDDKPQVRLTM 200
           ++L+   +D  P+VR ++
Sbjct: 666 VKLAEIIVDSVPEVRASV 683


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 286 GWGDVSEKTELVVNSPPSF----QYAMNHYSGALYKSQVSFMWKLKNVNDSLTDEKIWQA 341
           G  + S K  +V  + P      +YA+NH    + K+ +   WK K   DS T       
Sbjct: 440 GLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACIGKASIMLDWKHKRTPDSDTQMIFATT 499

Query: 342 GTQS--YLRLSP----GVDVYRTYLCFANNSVGVS 370
             Q   YL+ SP     VD   +   F+N +V  +
Sbjct: 500 FPQDMCYLKFSPFDASTVDWKNSKEAFSNEAVSAA 534


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 288 GDVSEKTELVVNSPPSFQYAMNH 310
           GD+ E T+  +NS PS Q A  H
Sbjct: 210 GDIQELTKGTINSDPSLQAASQH 232


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 123 RGVDMGNYTC---LLTNSVGNGTSEDNIVVNVLCEWLSFYVLSFWVVTNDLQGSGSKSQA 179
           R V++G+Y     ++T S+    + +   V    ++L FYV    ++ N L  +  +   
Sbjct: 189 RLVELGDYVLDLIIITQSIMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLE 248

Query: 180 KN----VMRLS---NYCIDDKPQVRLTMS 201
           K     V R+     YC +D P +RL  S
Sbjct: 249 KLLDQIVKRMKICFTYCKNDNPSIRLLYS 277


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 295 ELVVNSPPS-FQYAMNHYSGALYKSQVSFMWKLKNVNDSLTD 335
           EL +  P +   Y +   S   YKS VSFM+K ++ N    D
Sbjct: 833 ELNIEDPDTKISYLLEDLSDLKYKSLVSFMFKEQDANKKRED 874


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,021
Number of Sequences: 5004
Number of extensions: 89857
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 6
length of query: 397
length of database: 2,362,478
effective HSP length: 74
effective length of query: 323
effective length of database: 1,992,182
effective search space: 643474786
effective search space used: 643474786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)