Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000067-TA|BGIBMGA000067-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin
subtype 2, IPR013098|Immunoglobulin I-set, IPR013151|Immunoglobulin
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0637 + 5104904-5105131,5105222-5105309,5105483-5106288 31 2.1
02_01_0405 - 2952434-2955583 30 3.7
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 29 4.9
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 29 6.5
10_01_0063 - 827069-827089,827444-829384,830582-830593 29 6.5
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 29 6.5
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 29 6.5
03_05_0588 + 25883705-25883856,25884201-25884422,25885660-258857... 29 6.5
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 29 8.6
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 29 8.6
07_03_1166 - 24461881-24462013,24462255-24462643,24462877-244629... 29 8.6
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049... 29 8.6
>11_01_0637 + 5104904-5105131,5105222-5105309,5105483-5106288
Length = 373
Score = 30.7 bits (66), Expect = 2.1
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 185 LSNYCIDDKPQVRLTMSSPSPILETDHKNVTLTCEVV-SGNPPTLD----EVIWYLDGEV 239
L N C+D P RL + S D NV L ++ SG P T + WYL G+
Sbjct: 191 LQNKCVDLPPIPRLRIKS---YFRVDRNNVLLITRLLASGYPLTAGMLHGTLYWYLKGDQ 247
Query: 240 LKHLPDCNGT 249
+ P C T
Sbjct: 248 YYYAPKCATT 257
>02_01_0405 - 2952434-2955583
Length = 1049
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 165 VVTNDLQGSGSKSQAKNVMRLSNYCIDDKPQVRLTM 200
V+ + LQG+G + Q V+ + C+D P +R TM
Sbjct: 997 VLDSTLQGTGCEEQMLKVLETACKCVDGNPLMRPTM 1032
>10_08_1044 +
22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 12 ISNLTIEATRFENGQKFHCEAANEVTIETKDHPMHATRELEI 53
+SN++ + F GQ + +E T+ET D P AT LEI
Sbjct: 31 VSNMSFKMKEFFQGQNMADKIVDEATLETMDAPDWAT-NLEI 71
>10_08_0521 + 18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 199 TMSSPSPILETDHKNVTLTCEVVSGNPPTLDEVIWYLDGEVLKHLPDCNGTDGDENLCNE 258
T+ P P + N+ + + GN L EV+ G ++++P G D L E
Sbjct: 1067 TLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRE 1126
Query: 259 VD 260
++
Sbjct: 1127 LE 1128
>10_01_0063 - 827069-827089,827444-829384,830582-830593
Length = 657
Score = 29.1 bits (62), Expect = 6.5
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 129 NYTCLLTNS----VGNGTSEDNIVV--NVLCEWLSFYVLSFWVVTNDLQGSGSKSQA--K 180
NY+CLL+ V GT EDN VV + E L + +F + G SQ K
Sbjct: 379 NYSCLLSGGTSGKVYKGTLEDNTVVAVRIFSEALEGFEEAF------INGGMILSQIVHK 432
Query: 181 NVMRLSNYCID 191
N++RL YC++
Sbjct: 433 NIIRLLGYCLN 443
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 168 NDLQGSGSKSQAKNVMRLSNYCIDDKPQVRLTMSSPSPILET-DHKNV 214
N L+G K Q + V+ L ++C P R TMS +L+ D++N+
Sbjct: 385 NKLKGEFDKRQMERVIILGHWCSMKDPIKRPTMSDAMDVLQQYDYRNL 432
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 29.1 bits (62), Expect = 6.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 266 LQDTTKSFHGNYSCKGKNFAGWGDVSEKTELVVNSPPSFQYAMNHYSGALYKSQVSFMW 324
L DT + N+ C GK DVS ++ NSP + Y M+ ++ L + F W
Sbjct: 592 LDDTHPQDYLNFYCLGKREVS-NDVSTTSQSNENSPQVYGYRMSLWAEHLGTVEECFRW 649
>03_05_0588 +
25883705-25883856,25884201-25884422,25885660-25885759,
25885897-25886148
Length = 241
Score = 29.1 bits (62), Expect = 6.5
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 305 QYAMNHYSGALYKSQVSFMWKLKNVNDSLTDEKIWQAGTQSY 346
+Y N Y G K QV W L++VN +L EKI AG+ Y
Sbjct: 145 RYYQNFYFGKSEKGQVHGPWILRDVNYNLYCEKI--AGSWFY 184
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 95 DGERVNVNDTAHYQGGTTDQHSLIIMNARGV 125
DG RVN T + G+TDQH+ I GV
Sbjct: 411 DGNRVNQGLTVYGNKGSTDQHAYIQQLREGV 441
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 95 DGERVNVNDTAHYQGGTTDQHSLIIMNARGV 125
DG RVN T + G+TDQH+ I GV
Sbjct: 402 DGNRVNQGLTVYGNKGSTDQHAYIQQLREGV 432
>07_03_1166 -
24461881-24462013,24462255-24462643,24462877-24462948,
24463718-24463887,24464232-24464362,24464744-24464860,
24464969-24465351,24465582-24465764
Length = 525
Score = 28.7 bits (61), Expect = 8.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 185 LSNYCIDDKPQVRLTMSSPSPILETDHKNVTLTCEVVSGNPPTLDEVIW 233
+S+ + +K + SSPSP E VTLTC VV G+ TL W
Sbjct: 355 VSSKTLSEKELLSYNGSSPSPAFEV----VTLTCAVVGGD--TLQPCPW 397
>03_02_0880 -
12103703-12103726,12103938-12104210,12104389-12104931,
12105017-12105374,12105696-12105994,12106116-12106189,
12106630-12106717,12107573-12107674,12107813-12107841,
12108118-12108235
Length = 635
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 102 NDTAHYQGGTTDQHSLIIMNARGVDMGNYTCLLTNSVGNGTSEDNIVVNVLCEWLSFYVL 161
+D+A ++ D +I++ + + ++ ++V N +N+V ++L + +FY +
Sbjct: 319 DDSAVHKFNVPDHRHYVILSKNVLAA---SVVINSTVSNSEETENVVFHILTDAQNFYAM 375
Query: 162 SFWVVTNDLQGS 173
W N + S
Sbjct: 376 KHWFGRNSYRES 387
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,808
Number of Sequences: 37544
Number of extensions: 560677
Number of successful extensions: 1181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 13
length of query: 397
length of database: 14,793,348
effective HSP length: 84
effective length of query: 313
effective length of database: 11,639,652
effective search space: 3643211076
effective search space used: 3643211076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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