Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000067-TA|BGIBMGA000067-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin
subtype 2, IPR013098|Immunoglobulin I-set, IPR013151|Immunoglobulin
(397 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42960.1 68415.m05328 protein kinase family protein contains ... 30 2.3
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 30 2.3
At1g29720.1 68414.m03633 protein kinase family protein contains ... 30 3.1
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At4g28670.1 68417.m04097 protein kinase family protein contains ... 29 4.1
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 29 4.1
At5g43070.1 68418.m05258 MFP1 attachment factor, putative contai... 29 7.2
At5g34980.1 68418.m04128 hypothetical protein 28 9.5
At5g15630.1 68418.m01829 phytochelatin synthetase family protein... 28 9.5
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ... 28 9.5
At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 28 9.5
>At2g42960.1 68415.m05328 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 494
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 152 LCEWLSFYV---LSFWVVTNDLQGSGSKSQAKNVMRLSNYCIDDKPQVRLTMSSPSPILE 208
L EWL V + VV L+ SKS K + +S C+D + + R MS + +LE
Sbjct: 396 LVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLE 455
Query: 209 TD 210
+D
Sbjct: 456 SD 457
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 116 SLIIMNARGVDMGNYTCLLTNSVGNGTSEDN-IVVNVLC 153
S ++NA GV+ G++T +L + G + +N I V+ LC
Sbjct: 525 SASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLC 563
>At1g29720.1 68414.m03633 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 300
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 165 VVTNDLQGSGSKSQAKNVMRLSNYCIDDKPQVRLTMSSPSPILE 208
+V L+G ++S+A +++++ C + P +R TMS +LE
Sbjct: 181 IVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLE 224
>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 376
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 135 TNSVGNGTSEDNIVVNVLCEWLSFYVLSFWVVTNDLQGSGSKSQAKNVMRLSNYCIDDKP 194
+ GN +SEDN +N + + SF V W+ + S S A+ + S+ +DD P
Sbjct: 304 SEQTGNSSSEDNKKINTVAKGESFSVSKIWLWPKKDKFS---SDAQRRLPSSSLNVDDLP 360
Query: 195 QV 196
++
Sbjct: 361 KL 362
>At4g28670.1 68417.m04097 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 625
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 165 VVTNDLQGSGSKSQAKNVMRLSNYCIDDKPQVRLTMS 201
++ D+ K + K VM++ C + PQ+R TMS
Sbjct: 563 MIDKDMGEDTDKQEMKRVMQIGLLCTQESPQLRPTMS 599
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 267 QDTTKSFHGNYSCKGKNFAGWGDVSE-KTELVVNSPPSFQYAMNHYSG 313
Q SFHG S + F G+GDV + +L V + + AM+ Y G
Sbjct: 94 QGRESSFHGEASSSMRGFVGYGDVHRFEQDLRVRASFHGESAMSSYVG 141
>At5g43070.1 68418.m05258 MFP1 attachment factor, putative contains
similarity to MFP1 attachment factor 1 similar to MFP1
attachment factor 1 [Glycine max] gi|7546729|gb|AAF63659
Length = 155
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 198 LTMSSPSPILETDHKNVTLTCEVVSG-NPPTLDEVIW 233
+T SSP PI ET++ T E NP T+ IW
Sbjct: 9 ITTSSPPPISETENSTTLPTTETEKNPNPVTISLRIW 45
>At5g34980.1 68418.m04128 hypothetical protein
Length = 115
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 159 YVLSFWVVTNDLQGSGSKSQAKN 181
YV SFW+V+++L + SKS N
Sbjct: 75 YVFSFWLVSSNLLANSSKSPENN 97
>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL4 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 431
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 230 EVIWYLDGEVLKHLPDCNGTDGDENLCNEVDPSML-LLQDTTKSFHGNYSCKGKNFAGWG 288
EVIW + G DC+ G+ C + P+++ LL + + CKG WG
Sbjct: 74 EVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWG 133
>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 538
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 129 NYTCLLTNSVGNGTS---EDNIVVNVLCEWLSFY 159
N++C N G G S E+ +V++VLC LSF+
Sbjct: 334 NFSCDACNRDGRGFSYKDEEGVVLDVLCASLSFF 367
>At2g38800.1 68415.m04764 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 612
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 190 IDDKPQVRLTMSSPSPILETDHKNVTLTCEVVSGNPPTLDEVIWYLDGEVLKHLPDCNGT 249
+D Q+ T+S +P ETD + + + E+V + E D E + +
Sbjct: 247 VDIDSQISETVSEGAPRSETDSDDYSDSAEMVIELKESCLEETLVDDSE--NEVQEKANR 304
Query: 250 DGDENLCNEVDPSMLLLQDTTKSFHGN 276
DGD L E D L++D+ GN
Sbjct: 305 DGDTYLLKESDLEETLVEDSMNQDEGN 331
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,517,291
Number of Sequences: 28952
Number of extensions: 470520
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 14
length of query: 397
length of database: 12,070,560
effective HSP length: 83
effective length of query: 314
effective length of database: 9,667,544
effective search space: 3035608816
effective search space used: 3035608816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -