Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000066-TA|BGIBMGA000066-PA|IPR001515|Ribosomal protein
L32e
(134 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 159 1e-40
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 157 4e-40
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 1.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 4.0
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 4.0
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 25 5.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 5.3
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 5.3
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 24 9.3
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 159 bits (387), Expect = 1e-40
Identities = 72/122 (59%), Positives = 96/122 (78%)
Query: 11 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 70
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 71 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 130
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 131 QE 132
QE
Sbjct: 126 QE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 157 bits (382), Expect = 4e-40
Identities = 72/122 (59%), Positives = 95/122 (77%)
Query: 11 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 70
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 71 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 130
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 131 QE 132
QE
Sbjct: 126 QE 127
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 1.7
Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 71 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 128
N R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654
Query: 129 RSQENE 134
R + +
Sbjct: 655 RRESQK 660
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 19 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 24 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 82
+ R D++ N RK G+ + F L NIGYG+ K + + +K +H++
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562
Query: 83 E 83
E
Sbjct: 563 E 563
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 82 KELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAA 126
K L M++N K C E + +K+K+I ++S+ N +A
Sbjct: 201 KPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVVAPNLSA 245
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 8 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 57
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 5.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 95 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 123
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 97 EIAHGVSSKKRKLIVERAQQLSIRVTNA 124
EIAH + S + + + ER Q ++ +NA
Sbjct: 93 EIAHALQSIQERELRERQQMSNVEASNA 120
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,633
Number of Sequences: 5004
Number of extensions: 22780
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 9
length of query: 134
length of database: 2,362,478
effective HSP length: 66
effective length of query: 68
effective length of database: 2,032,214
effective search space: 138190552
effective search space used: 138190552
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 49 (23.8 bits)
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