Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000066-TA|BGIBMGA000066-PA|IPR001515|Ribosomal protein
L32e
(134 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 188 1e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 5e-43
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 162 7e-41
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 128 1e-30
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502... 30 0.72
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 28 2.2
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 2.2
09_04_0402 - 17304828-17305622 28 2.9
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 8.9
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 188 bits (459), Expect = 1e-48
Identities = 93/134 (69%), Positives = 107/134 (79%), Gaps = 1/134 (0%)
Query: 1 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 61 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 121 VTNAAARLRSQENE 134
VTN ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 169 bits (412), Expect = 5e-43
Identities = 82/122 (67%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 1 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 61 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 121 VT 122
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 162 bits (394), Expect = 7e-41
Identities = 76/102 (74%), Positives = 87/102 (85%)
Query: 33 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 92
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 93 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 134
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 31
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 128 bits (310), Expect = 1e-30
Identities = 59/88 (67%), Positives = 70/88 (79%)
Query: 5 PVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 64
P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYGS+KK
Sbjct: 326 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 385
Query: 65 TRHMLPNGFRKVLVHNVKELEILMMQNR 92
TRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 386 TRHYLPNKFKKFVVHNVSELELLMMHNR 413
>06_02_0293 +
13849250-13849341,13850044-13850112,13850257-13850266,
13850448-13850483,13850978-13851039,13851260-13851359,
13851428-13851469,13851756-13851839,13851955-13852095
Length = 211
Score = 29.9 bits (64), Expect = 0.72
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 63 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIA-HGVSSKKRKLIVERAQQL 117
K+ H L R++L H++ LE +++ + E + H V KK K++VE+ Q+L
Sbjct: 79 KQQLHNLEGSQRQLLAHDLSGLEWNDLKSLENQLETSLHNVRLKKDKIMVEQIQEL 134
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 28.3 bits (60), Expect = 2.2
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 4 RPVYRPTIVKKRTKRFIRHQSDRYDK--LKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 61
R YR +KR++ R+ DRY + +R R + RRR + + P S
Sbjct: 263 RDDYRERDYRKRSRSRDRYGRDRYRERDYRRRSRSRSYTPDDYRRRGRDS-VSPARRSLS 321
Query: 62 NKKTRHMLPNGFRKVLVHNVKELEILM 88
++R P+ +RK H + +E+LM
Sbjct: 322 RSRSRSYSPDDYRKRGKHRMNGVELLM 348
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 2.2
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 31 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 84
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 85 EILMMQNRKYCAEIAH 100
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
>09_04_0402 - 17304828-17305622
Length = 264
Score = 27.9 bits (59), Expect = 2.9
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 27 YDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEI 86
+ L +WR D V+R+ K + ++G K M+ + H E E
Sbjct: 116 FSGLGGSWRSGLSRDEEVKRKAKAKTRGLDVGQWVKKYMASMVEHLLASFSRHGGGEREK 175
Query: 87 LMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 130
Q R+ + AHG S+ + + ER ++ ++++A A LR+
Sbjct: 176 REQQRRRPHSFSAHGPSALREQR--ERWRRRRGQLSSAPASLRA 217
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 21 RHQSDRYDKLKRNWRKPRGIDN 42
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,592,439
Number of Sequences: 37544
Number of extensions: 139450
Number of successful extensions: 412
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 10
length of query: 134
length of database: 14,793,348
effective HSP length: 75
effective length of query: 59
effective length of database: 11,977,548
effective search space: 706675332
effective search space used: 706675332
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 55 (26.2 bits)
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