GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000066-TA|BGIBMGA000066-PA|IPR001515|Ribosomal protein
L32e
         (134 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             219   5e-58
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   3.0  
SB_41763| Best HMM Match : S_layer_C (HMM E-Value=1.2)                 27   6.9  
SB_55051| Best HMM Match : RVT_1 (HMM E-Value=0.014)                   26   9.1  
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)                 26   9.1  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.1  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  219 bits (536), Expect = 5e-58
 Identities = 100/132 (75%), Positives = 117/132 (88%)

Query: 3   IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 62
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 63  KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 122
           KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 123 NAAARLRSQENE 134
           N+ ARLRS+ENE
Sbjct: 122 NSNARLRSEENE 133


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 63  KKTRHMLPN-GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 121
           K+ +H+L N  F  VLV +++E E    Q ++   EIA  + ++  +L  E ++ L  + 
Sbjct: 93  KQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREEGSRLLQEQQ 152

Query: 122 TNAAARLRSQENE 134
               A++R +E +
Sbjct: 153 ELLKAQIREEEQK 165


>SB_41763| Best HMM Match : S_layer_C (HMM E-Value=1.2)
          Length = 393

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSK 105
           S++  R +  N   KV   + KE+ ++ + N KYC  + H + S+
Sbjct: 129 SSENMRKLRTNAGDKV-TSDAKEVALVAVHNTKYCIPLNHPILSE 172


>SB_55051| Best HMM Match : RVT_1 (HMM E-Value=0.014)
          Length = 372

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 24  SDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT---RH-MLPNGFRKVLVH 79
           S  + +L++N  K RGI    + +     ++P + YGS   T   RH M  N F    + 
Sbjct: 236 SAAFGRLRKNVWKRRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLR 295

Query: 80  NVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 122
            +  L +   +       +A  V   +RK  V   +++ +++T
Sbjct: 296 KI--LNVRWQEKIPDTEVLARAVKCPQRKSNVALLKRIVMKIT 336


>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
          Length = 613

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 63  KKTRHMLPNGFRKVLVHN 80
           K+T  ++P G +K+L HN
Sbjct: 316 KRTHQLIPRGLKKLLTHN 333


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 39  GIDNRVRRRFKGQYLMPNIGYG-SNKKTRHMLPNGFRKV 76
           GI+N +R  FKG +L+   G G    K R   P G  KV
Sbjct: 123 GIENGLRYNFKGHFLVDTKGAGPGTLKIRIHGPKGAFKV 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,337,821
Number of Sequences: 59808
Number of extensions: 168163
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 6
length of query: 134
length of database: 16,821,457
effective HSP length: 75
effective length of query: 59
effective length of database: 12,335,857
effective search space: 727815563
effective search space used: 727815563
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 55 (26.2 bits)