GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000066-TA|BGIBMGA000066-PA|IPR001515|Ribosomal protein
L32e
         (134 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...   234   8e-62
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...   234   8e-62
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...   234   8e-62
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...   234   8e-62
BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.       116   3e-26
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      51   1e-06
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      49   4e-06
U35113-1|AAA78935.1|  715|Homo sapiens mta1 protein.                   31   1.3  
BC009443-1|AAH09443.2|  263|Homo sapiens MTA1 protein protein.         31   1.3  
D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.       29   5.1  
BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor ...    29   5.1  
AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.                 29   5.1  

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score =  234 bits (572), Expect = 8e-62
 Identities = 108/133 (81%), Positives = 120/133 (90%)

Query: 2   AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 61
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 62  NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 121
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 122 TNAAARLRSQENE 134
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  234 bits (572), Expect = 8e-62
 Identities = 108/133 (81%), Positives = 120/133 (90%)

Query: 2   AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 61
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 62  NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 121
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 122 TNAAARLRSQENE 134
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  234 bits (572), Expect = 8e-62
 Identities = 108/133 (81%), Positives = 120/133 (90%)

Query: 2   AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 61
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 62  NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 121
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 122 TNAAARLRSQENE 134
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  234 bits (572), Expect = 8e-62
 Identities = 108/133 (81%), Positives = 120/133 (90%)

Query: 2   AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 61
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 62  NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 121
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 122 TNAAARLRSQENE 134
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.
          Length = 107

 Score =  116 bits (279), Expect = 3e-26
 Identities = 54/81 (66%), Positives = 64/81 (79%)

Query: 54  MPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVER 113
           MPNIGYG NKKT+H+LP+GF K LVHNVKELE+L++ N+ YC EI H VSSK  K I+ER
Sbjct: 27  MPNIGYGRNKKTKHILPSGFWKFLVHNVKELEVLLVSNKSYCVEITHDVSSKNCKAILER 86

Query: 114 AQQLSIRVTNAAARLRSQENE 134
           A Q+ IRVTNA A L S E+E
Sbjct: 87  AAQVVIRVTNANASLHSAESE 107


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)

Query: 2  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKR 32
          A+R + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3  ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 21/30 (70%), Positives = 26/30 (86%)

Query: 2  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 31
          A+R + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3  ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


>U35113-1|AAA78935.1|  715|Homo sapiens mta1 protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 31  KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 71
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM P+
Sbjct: 582 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHMGPS 618


>BC009443-1|AAH09443.2|  263|Homo sapiens MTA1 protein protein.
          Length = 263

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 31  KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 71
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM P+
Sbjct: 130 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHMGPS 166


>D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 66  RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 110
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 172 RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 216


>BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor
           protein (cytoplasmic tail) binding protein 2 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 66  RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 110
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 76  RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120


>AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 66  RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 110
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 76  RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,818
Number of Sequences: 224733
Number of extensions: 614546
Number of successful extensions: 1550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1540
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 73,234,838
effective HSP length: 82
effective length of query: 52
effective length of database: 54,806,732
effective search space: 2849950064
effective search space used: 2849950064
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)