GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000066-TA|BGIBMGA000066-PA|IPR001515|Ribosomal protein
L32e
         (134 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   238   2e-63
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   238   2e-63
BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   238   2e-63
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   238   2e-63
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   238   2e-63
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   238   2e-63
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   238   2e-63
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   182   2e-46
X04132-3|CAA27749.1|  455|Drosophila melanogaster protein ( Dros...    27   8.5  
AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.      27   8.5  

>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 14  MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 73

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 74  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 133

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 134 LTNPNGRLRSQENE 147


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  238 bits (582), Expect = 2e-63
 Identities = 109/134 (81%), Positives = 118/134 (88%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 14  MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 73

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 74  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 133

Query: 121 VTNAAARLRSQENE 134
           +TN   RLRSQENE
Sbjct: 134 LTNPNGRLRSQENE 147


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  182 bits (442), Expect = 2e-46
 Identities = 85/120 (70%), Positives = 97/120 (80%), Gaps = 1/120 (0%)

Query: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRV RRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYG 60

Query: 61  SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 120
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>X04132-3|CAA27749.1|  455|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 455

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 62  NKKTRHMLPNGFRKVLVHNVKELEILMMQN-----RKYCAEIAHGVSSKKRKLI-VERAQ 115
           N+ T+ +  N   +VLV++  E+  L+ QN     RK CA+  + + + + KLI ++   
Sbjct: 31  NRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIKNKF 90

Query: 116 QLSIRV-TNAAARLRSQENE 134
            L I + T     LR   NE
Sbjct: 91  SLQIEIPTIVNTPLRINLNE 110


>AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.
          Length = 451

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 62  NKKTRHMLPNGFRKVLVHNVKELEILMMQN-----RKYCAEIAHGVSSKKRKLI-VERAQ 115
           N+ T+ +  N   +VLV++  E+  L+ QN     RK CA+  + + + + KLI ++   
Sbjct: 27  NRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIKNKF 86

Query: 116 QLSIRV-TNAAARLRSQENE 134
            L I + T     LR   NE
Sbjct: 87  SLQIEIPTIVNTPLRINLNE 106


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,174,368
Number of Sequences: 52641
Number of extensions: 246371
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 10
length of query: 134
length of database: 24,830,863
effective HSP length: 77
effective length of query: 57
effective length of database: 20,777,506
effective search space: 1184317842
effective search space used: 1184317842
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 57 (27.1 bits)