Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000066-TA|BGIBMGA000066-PA|IPR001515|Ribosomal protein
L32e
(134 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 169 6e-43
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 31 0.21
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 30 0.64
AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical ... 29 1.1
AC024751-5|AAK21514.2| 220|Caenorhabditis elegans Hypothetical ... 27 4.5
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 26 7.9
AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical ... 26 7.9
AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical ... 26 7.9
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 169 bits (411), Expect = 6e-43
Identities = 75/124 (60%), Positives = 103/124 (83%)
Query: 11 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 70
+VKK+ +F RH+SDRY ++ +WRKP+GIDNRVRRRF+G MP IG+GS+++TR +LP
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70
Query: 71 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 130
NG++KVLV NVK+L++L+MQ+ KY EI HGVS+K RK IVERA QL+I++TN ARLR+
Sbjct: 71 NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130
Query: 131 QENE 134
+E+E
Sbjct: 131 EESE 134
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 31.5 bits (68), Expect = 0.21
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 7 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 64
Y P + KK +RFI ++R+D + RN P R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 65 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 122
+ L +K+ ++ ++ ++A +++ K I +R +L +T
Sbjct: 61 AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120
Query: 123 NAAARLRSQENE 134
+ +NE
Sbjct: 121 GKTQFVAPLQNE 132
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 29.9 bits (64), Expect = 0.64
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 7 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 64
Y P + KK +RFI ++R+D + RN P R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 65 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 122
+ L +K+ ++ ++ ++A +++ K I +R +L +T
Sbjct: 61 AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120
Query: 123 NAA 125
A
Sbjct: 121 FVA 123
>AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical
protein Y47H10A.2 protein.
Length = 381
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 51 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 91
QYLM NI R P+GF K L+ + L+I QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253
>AC024751-5|AAK21514.2| 220|Caenorhabditis elegans Hypothetical
protein Y18H1A.4 protein.
Length = 220
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 20 IRHQSDRYDKLKRNWRKPRGID 41
+RH ++R D + RNWRK G D
Sbjct: 12 VRH-AEREDNINRNWRKLDGAD 32
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
F23D12.2 protein.
Length = 1322
Score = 26.2 bits (55), Expect = 7.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 70 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 129
P+ RK+LV NVK L ++ +Y A + + R+ A+QLSI ++ A+R
Sbjct: 1097 PSSTRKILVSNVK-LPAILQSKDEYIA--SQKLMQDLREKTQNLAKQLSI-ISAQASRKS 1152
Query: 130 SQE 132
S E
Sbjct: 1153 SDE 1155
>AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7b protein.
Length = 404
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 2 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 46
A RP +P K+R RF+ S R+++ R P + +R R
Sbjct: 295 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 338
>AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7a protein.
Length = 480
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 2 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 46
A RP +P K+R RF+ S R+++ R P + +R R
Sbjct: 371 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 414
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,570
Number of Sequences: 27539
Number of extensions: 124414
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 12,573,161
effective HSP length: 74
effective length of query: 60
effective length of database: 10,535,275
effective search space: 632116500
effective search space used: 632116500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 55 (26.2 bits)
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