Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000065-TA|BGIBMGA000065-PA|IPR001216|Cysteine
synthase/cystathionine beta-synthase P-phosphate-binding site,
IPR001926|Pyridoxal-5'-phosphate-dependent enzyme, beta subunit
(440 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 318 4e-87
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064) 114 1e-25
SB_18116| Best HMM Match : PALP (HMM E-Value=0) 114 1e-25
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05) 38 0.021
SB_2970| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.028
SB_44496| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37) 31 1.4
SB_38968| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=0.78) 31 2.5
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_45280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 318 bits (782), Expect = 4e-87
Identities = 162/306 (52%), Positives = 206/306 (67%), Gaps = 8/306 (2%)
Query: 15 NILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSGIAKS 74
NIL+ IGDTPLVR+N I K YGL+CE+ AKCEF N GGS+KDRI M+ EA++ G K
Sbjct: 3 NILQKIGDTPLVRINNIGKTYGLKCELLAKCEFFNAGGSVKDRIGLRMIEEAEREGRLKP 62
Query: 75 GTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTPAMAPWE 134
G IEPTSGNTGIG+ALA AV G+ C IV P+K S+EK+ + LGAE+V+TP A ++
Sbjct: 63 GDTLIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSNEKVDVLRALGAEIVRTPTEAKFD 122
Query: 135 SSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEILALVP-DVDMIXXXXXXX 193
S E + VA+R E N+ DQY+N NP HY+ TA+EIL VDM+
Sbjct: 123 SPESHIGVAQRLNAEIANSHILDQYRNPGNPLAHYDSTADEILQQCDGKVDMVVLGAGTG 182
Query: 194 XXXXXXAQKVKEKCPKCIIVTVDPQGSLI-----FGEGPADLYFVEGIGGDFVPDVLDKS 248
A+K+KEKCP IV VDP+GS++ E +Y VEGIG DFVP VLD+S
Sbjct: 183 GTITGIARKLKEKCPGVTIVGVDPKGSILAEPESLNESDVSMYHVEGIGYDFVPTVLDRS 242
Query: 249 VIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAKKLNFGAGKRVVVILPD 308
V+DK K D +F MSR +I++EGLLCGGSSG+AM++A+ AAK LN G+R VVILPD
Sbjct: 243 VVDKWYKSEDKTSFTMSRRLIREEGLLCGGSSGSAMVAAVEAAKSLN--EGQRCVVILPD 300
Query: 309 GIRNYM 314
+RNY+
Sbjct: 301 SVRNYI 306
>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
Length = 129
Score = 114 bits (275), Expect = 1e-25
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 33 KDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSGIAKSGTRFIEPTSGNTGIGVAL 92
K GL+CE+ AKCEF+NP GS+KDRI M+ +A++ K G IEPTSGNTGI +AL
Sbjct: 4 KRCGLKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLIEPTSGNTGIALAL 63
Query: 93 ATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTPAMAPWESSEHFLSVAKRRLLEDPN 152
A+AV G+ C IV +K S +K T LG V+ PA A ++S E + +A++ E PN
Sbjct: 64 ASAVKGYRCVIVMSEKMSSDKADTQKALGGICVRAPAEAKFDSPESTIRLAQQLQKEIPN 123
Query: 153 AISCDQ 158
+ +Q
Sbjct: 124 SYVLNQ 129
>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
Length = 470
Score = 114 bits (275), Expect = 1e-25
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 33 KDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSGIAKSGTRFIEPTSGNTGIGVAL 92
K GL+CE+ AKCEF+NP GS+KDRI M+ +A++ K G IEPTSGNTGI +AL
Sbjct: 4 KRCGLKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLIEPTSGNTGIALAL 63
Query: 93 ATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTPAMAPWESSEHFLSVAKRRLLEDPN 152
A+AV G+ C IV +K S +K T LG V+ PA A ++S E + +A++ E PN
Sbjct: 64 ASAVKGYRCVIVMSEKMSSDKADTQKALGGICVRAPAEAKFDSPESTIRLAQQLQKEIPN 123
Query: 153 AISCDQ 158
+ +Q
Sbjct: 124 SYVLNQ 129
Score = 99 bits (238), Expect = 4e-21
Identities = 86/292 (29%), Positives = 142/292 (48%), Gaps = 55/292 (18%)
Query: 183 VDMIXXXXXXXXXXXXXAQKVKEKCPKCIIVTVDPQGSLIFGEGPADL---------YFV 233
+DM+ A+K++EK P IV VDP GS++ P +L Y V
Sbjct: 192 LDMLVIGTGTGGTLTGVARKIREKLPHVKIVAVDPYGSVL--AVPEELNKTEPGFKGYNV 249
Query: 234 EGIGGDFVPDVLDKSVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAKK 293
EGIG +VP VLD+ ++D+ +K D +AF ++ + K+EGLL GGSSG+ M +A+RAA+
Sbjct: 250 EGIGKPYVPVVLDRDLVDEWQKIGDKEAFYFAKRLSKEEGLLVGGSSGSVMAAAVRAAQD 309
Query: 294 LNFGAGKRVVVILPDGIRNYM--------------TKFVCDQWMEAHLFK-------EPP 332
L+ +R VV+ D IRNYM +KFV D+W+E + +P
Sbjct: 310 LD--ENQRCVVVFADSIRNYMYVPNRIVAWQKKIWSKFVSDEWLEERNLQHDDINDNDPQ 367
Query: 333 EREFLFFKGVLT--KDSLRSEATN-----PKKAGRIDFNEPVNRHLIKTYYKIVENRGNP 385
L K +L + + T+ + AGR+D + + + + K + ++ +
Sbjct: 368 HCSNLTVKDLLAFFSNGILGIVTHGNLLASEAAGRVDMSSTLEKLIYKKFDQVSRDTSLE 427
Query: 386 TVGLASRILDIAPFVIIVEAYYENSNKKQFKGYIPKGIVTTEHVMEYILEHQ 437
V SR LD FV++ + ++F +VT H++ +I+E +
Sbjct: 428 KV---SRCLDNDYFVLV-----PGCDSQEF------SVVTRGHLLNFIIERE 465
>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
Length = 407
Score = 37.5 bits (83), Expect = 0.021
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 14 NNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSGIAK 73
+ I I TP++ + + K G +F KCE + G+ K R + VL +S
Sbjct: 106 DRIAPYINSTPVMTSHTLDKMAGRS--LFFKCENLQKAGAFKFRGAMNAVLRLVESSDDP 163
Query: 74 SGTRFIEP-----TSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQ 126
SG++ P +SGN ++LA + IV P K + + GA +V+
Sbjct: 164 SGSKSQAPCVVTHSSGNHAQALSLAAKLMNLKAHIVMPKNAPHVKKAAVIEYGANIVE 221
>SB_2970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 37.1 bits (82), Expect = 0.028
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 114 MSTISLLGAEVVQTPAMAPWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTA 173
M + LGAEV P + P++ ++ A+R N + +Q+ N N R H+E T
Sbjct: 1 MDLLKALGAEVRPVPVV-PFDDQMNYNHQARRYAESIENGVWTNQFDNTANRRAHFETTG 59
Query: 174 EEI 176
EI
Sbjct: 60 PEI 62
>SB_44496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 35.1 bits (77), Expect = 0.11
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 88 IGVALATAVCGFGCTIVTPDKNSDEK 113
IG+ALA AV G+ C IV P+K S+EK
Sbjct: 2 IGLALAAAVKGYRCIIVMPEKMSNEK 27
>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
Length = 829
Score = 31.5 bits (68), Expect = 1.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 101 CTIVTPDKNSDEKMSTISLLGAEVVQTPAMAPWESSEHFLSVAKRRLLEDPNAISCDQYK 160
C + PD +SD ST+S+ + P EH + K ++ + S D+Y+
Sbjct: 163 CVVFDPDNDSDS--STLSVFLERYMSDGWEGPEPYKEHHVINRKEWVVTSDDGSSEDRYE 220
Query: 161 NDVNPRTHYEYTAE 174
+DV+ Y +E
Sbjct: 221 DDVSSANELGYASE 234
>SB_38968| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=0.78)
Length = 152
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 131 APWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEIL 177
A +E SE + S+ RR+L + + I CDQ+K+ + Y EE L
Sbjct: 34 ACYEISEGYGSLQNRRVLGEVSMIFCDQHKSLKKSGATWSYEEEEEL 80
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 131 APWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEIL 177
A +E SE + S+ RR+L + + I CDQ+K+ + Y EE L
Sbjct: 912 ACYEISEGYGSLQNRRVLGEVSMIFCDQHKSLKKSGATWSYEEEEEL 958
>SB_45280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.7 bits (61), Expect = 9.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 315 TKFVCDQWMEAHLFKEPPEREFLFFKGVLTKDSLRSEAT----NPKKAGRIDFNEPVNR- 369
T +C QW + K+P + + L K +L + + T NPK A ++ NR
Sbjct: 24 TNIICGQWYHKYRKKKPRDAKVLNIKELLEEGEANEKVTESEANPKPAINTEWAHSENRF 83
Query: 370 HLIKTYYK 377
+ +KT K
Sbjct: 84 NSLKTAEK 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,658,380
Number of Sequences: 59808
Number of extensions: 597459
Number of successful extensions: 1576
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 11
length of query: 440
length of database: 16,821,457
effective HSP length: 84
effective length of query: 356
effective length of database: 11,797,585
effective search space: 4199940260
effective search space used: 4199940260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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