GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000065-TA|BGIBMGA000065-PA|IPR001216|Cysteine
synthase/cystathionine beta-synthase P-phosphate-binding site,
IPR001926|Pyridoxal-5'-phosphate-dependent enzyme, beta subunit
         (440 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058508-1|AAL13737.1|  522|Drosophila melanogaster LD21426p pro...   337   2e-92
AE014298-3078|AAF50863.1|  522|Drosophila melanogaster CG1753-PB...   337   2e-92
AE014298-3077|AAF50862.1|  522|Drosophila melanogaster CG1753-PA...   337   2e-92
AY058640-1|AAL13869.1|  950|Drosophila melanogaster LD33980p pro...    32   1.8  
AF197910-1|AAF15596.1| 1490|Drosophila melanogaster Numb-associa...    32   1.8  
AE014134-3001|AAN11019.1|  950|Drosophila melanogaster CG10637-P...    32   1.8  
AE014134-3000|AAF53727.2| 1488|Drosophila melanogaster CG10637-P...    32   1.8  
BT011344-1|AAR96136.1| 1447|Drosophila melanogaster RH51925p pro...    29   9.6  
AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA...    29   9.6  

>AY058508-1|AAL13737.1|  522|Drosophila melanogaster LD21426p
           protein.
          Length = 522

 Score =  337 bits (828), Expect = 2e-92
 Identities = 174/329 (52%), Positives = 217/329 (65%), Gaps = 8/329 (2%)

Query: 9   RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQK 68
           R +I  NILE IG TPLV+LN IP   G+ECEM+AKCEF+NPGGS+KDRI Y MV +A++
Sbjct: 42  RQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEE 101

Query: 69  SGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTP 128
            G+ K G   IEPTSGNTGIG+A+A AV G+ C IV P+K S+EK+S +  LGA++++TP
Sbjct: 102 QGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTP 161

Query: 129 AMAPWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEIL-ALVPDVDMIX 187
             A ++S E  + VA++   E PN+I  DQY+N  NP  HY+ TA EIL  L   VDMI 
Sbjct: 162 TEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIV 221

Query: 188 XXXXXXXXXXXXAQKVKEKCPKCIIVTVDPQGSLI-----FGEGPADLYFVEGIGGDFVP 242
                        +K+KE+ P C IV VDP GS++       +     Y VEGIG DF P
Sbjct: 222 VSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPP 281

Query: 243 DVLDKSVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAKKLNFGAGKRV 302
            V D +V+D   K  D D F MSR +  +EGLLCGGSSG AM +A+  A+KL    G+R 
Sbjct: 282 TVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLK--KGQRC 339

Query: 303 VVILPDGIRNYMTKFVCDQWMEAHLFKEP 331
           VVILPDGIRNYMTKFV D WMEA  FKEP
Sbjct: 340 VVILPDGIRNYMTKFVSDNWMEARNFKEP 368


>AE014298-3078|AAF50863.1|  522|Drosophila melanogaster CG1753-PB,
           isoform B protein.
          Length = 522

 Score =  337 bits (828), Expect = 2e-92
 Identities = 174/329 (52%), Positives = 217/329 (65%), Gaps = 8/329 (2%)

Query: 9   RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQK 68
           R +I  NILE IG TPLV+LN IP   G+ECEM+AKCEF+NPGGS+KDRI Y MV +A++
Sbjct: 42  RQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEE 101

Query: 69  SGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTP 128
            G+ K G   IEPTSGNTGIG+A+A AV G+ C IV P+K S+EK+S +  LGA++++TP
Sbjct: 102 QGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTP 161

Query: 129 AMAPWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEIL-ALVPDVDMIX 187
             A ++S E  + VA++   E PN+I  DQY+N  NP  HY+ TA EIL  L   VDMI 
Sbjct: 162 TEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIV 221

Query: 188 XXXXXXXXXXXXAQKVKEKCPKCIIVTVDPQGSLI-----FGEGPADLYFVEGIGGDFVP 242
                        +K+KE+ P C IV VDP GS++       +     Y VEGIG DF P
Sbjct: 222 VSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPP 281

Query: 243 DVLDKSVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAKKLNFGAGKRV 302
            V D +V+D   K  D D F MSR +  +EGLLCGGSSG AM +A+  A+KL    G+R 
Sbjct: 282 TVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLK--KGQRC 339

Query: 303 VVILPDGIRNYMTKFVCDQWMEAHLFKEP 331
           VVILPDGIRNYMTKFV D WMEA  FKEP
Sbjct: 340 VVILPDGIRNYMTKFVSDNWMEARNFKEP 368


>AE014298-3077|AAF50862.1|  522|Drosophila melanogaster CG1753-PA,
           isoform A protein.
          Length = 522

 Score =  337 bits (828), Expect = 2e-92
 Identities = 174/329 (52%), Positives = 217/329 (65%), Gaps = 8/329 (2%)

Query: 9   RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQK 68
           R +I  NILE IG TPLV+LN IP   G+ECEM+AKCEF+NPGGS+KDRI Y MV +A++
Sbjct: 42  RQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEE 101

Query: 69  SGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMSTISLLGAEVVQTP 128
            G+ K G   IEPTSGNTGIG+A+A AV G+ C IV P+K S+EK+S +  LGA++++TP
Sbjct: 102 QGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTP 161

Query: 129 AMAPWESSEHFLSVAKRRLLEDPNAISCDQYKNDVNPRTHYEYTAEEIL-ALVPDVDMIX 187
             A ++S E  + VA++   E PN+I  DQY+N  NP  HY+ TA EIL  L   VDMI 
Sbjct: 162 TEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIV 221

Query: 188 XXXXXXXXXXXXAQKVKEKCPKCIIVTVDPQGSLI-----FGEGPADLYFVEGIGGDFVP 242
                        +K+KE+ P C IV VDP GS++       +     Y VEGIG DF P
Sbjct: 222 VSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPP 281

Query: 243 DVLDKSVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAKKLNFGAGKRV 302
            V D +V+D   K  D D F MSR +  +EGLLCGGSSG AM +A+  A+KL    G+R 
Sbjct: 282 TVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLK--KGQRC 339

Query: 303 VVILPDGIRNYMTKFVCDQWMEAHLFKEP 331
           VVILPDGIRNYMTKFV D WMEA  FKEP
Sbjct: 340 VVILPDGIRNYMTKFVSDNWMEARNFKEP 368


>AY058640-1|AAL13869.1|  950|Drosophila melanogaster LD33980p
           protein.
          Length = 950

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 64  LEAQKSGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMS 115
           L  + S + K+G +FI  +SG TG GVA    +   G    T   +S   +S
Sbjct: 146 LREKASSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLS 197


>AF197910-1|AAF15596.1| 1490|Drosophila melanogaster Numb-associated
           kinase protein.
          Length = 1490

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 64  LEAQKSGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMS 115
           L  + S + K+G +FI  +SG TG GVA    +   G    T   +S   +S
Sbjct: 684 LREKASSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLS 735


>AE014134-3001|AAN11019.1|  950|Drosophila melanogaster CG10637-PB,
           isoform B protein.
          Length = 950

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 64  LEAQKSGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMS 115
           L  + S + K+G +FI  +SG TG GVA    +   G    T   +S   +S
Sbjct: 146 LREKASSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLS 197


>AE014134-3000|AAF53727.2| 1488|Drosophila melanogaster CG10637-PA,
           isoform A protein.
          Length = 1488

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 64  LEAQKSGIAKSGTRFIEPTSGNTGIGVALATAVCGFGCTIVTPDKNSDEKMS 115
           L  + S + K+G +FI  +SG TG GVA    +   G    T   +S   +S
Sbjct: 684 LREKASSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLS 735


>BT011344-1|AAR96136.1| 1447|Drosophila melanogaster RH51925p
           protein.
          Length = 1447

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 248 SVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAK 292
           S ++  EKP+D +  N   E  KKE    G +  AA+++AIR A+
Sbjct: 743 SKVNGAEKPDDKEKKNEEEE--KKERSTSGEARAAAIVNAIREAQ 785


>AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA
           protein.
          Length = 1448

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 248 SVIDKVEKPNDYDAFNMSREIIKKEGLLCGGSSGAAMISAIRAAK 292
           S ++  EKP+D +  N   E  KKE    G +  AA+++AIR A+
Sbjct: 744 SKVNGAEKPDDKEKKNEEEE--KKERSTSGEARAAAIVNAIREAQ 786


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,907,428
Number of Sequences: 52641
Number of extensions: 926414
Number of successful extensions: 1736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 9
length of query: 440
length of database: 24,830,863
effective HSP length: 87
effective length of query: 353
effective length of database: 20,251,096
effective search space: 7148636888
effective search space used: 7148636888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)