Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000064-TA|BGIBMGA000064-PA|IPR000866|Alkyl hydroperoxide
reductase/ Thiol specific antioxidant/ Mal allergen,
IPR012336|Thioredoxin-like fold
         (227 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...   228   2e-60
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...   228   3e-60
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    77   1e-14
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe...    73   2e-13
At3g08950.1 68416.m01045 electron transport SCO1/SenC family pro...    35   0.052
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe...    32   0.37 
At1g50830.1 68414.m05716 hypothetical protein                          29   2.6  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    29   3.4  
At5g02180.1 68418.m00139 amino acid transporter family protein b...    28   6.0  
At1g58227.1 68414.m06616 hypothetical protein                          28   6.0  
At5g66510.1 68418.m08386 bacterial transferase hexapeptide repea...    27   7.9  
At1g56630.1 68414.m06513 lipase class 3 family protein contains ...    27   7.9  

>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score =  228 bits (558), Expect = 2e-60
 Identities = 111/208 (53%), Positives = 149/208 (71%), Gaps = 6/208 (2%)

Query: 20  AKRINFSTTSTTR-APKVQKPAPDFSATAVVNGEFNQLKLSDFTGK-YVVLFFYPLDFTF 77
           A R NF+  +     P V   APDF A AV + EF ++KLS++ GK YV+LFFYPLDFTF
Sbjct: 65  ASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTF 124

Query: 78  VCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRNDGGLGKMEIPLLADYKK 137
           VCPTE+ AFSD+ ++F  ++ +V+GVS DS FSHLAW+ T R  GGLG +  PL++D  K
Sbjct: 125 VCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITK 184

Query: 138 QISKDYDVLL-DDGFALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH- 195
            ISK + VL+ D G ALRGLFIID+ G ++H ++N+L +GRSVDET+R ++A Q+  ++ 
Sbjct: 185 SISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENP 244

Query: 196 GEVCPAGWNPDTNADTIKPNPKDSKEYF 223
            EVCPAGW P     ++KP+PK SKEYF
Sbjct: 245 DEVCPAGWKP--GEKSMKPDPKLSKEYF 270


>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score =  228 bits (557), Expect = 3e-60
 Identities = 108/193 (55%), Positives = 142/193 (73%), Gaps = 5/193 (2%)

Query: 34  PKVQKPAPDFSATAVVNGEFNQLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKD 92
           P V   APDF A AV + EF ++KLSD+ GK YV+LFFYPLDFTFVCPTE+ AFSD+  +
Sbjct: 73  PLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSE 132

Query: 93  FAGIDCQVIGVSTDSEFSHLAWINTPRNDGGLGKMEIPLLADYKKQISKDYDVLL-DDGF 151
           F  ++ +V+GVS DS FSHLAW+ T R  GGLG +  PL++D  K ISK + VL+ D G 
Sbjct: 133 FEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGI 192

Query: 152 ALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH-GEVCPAGWNPDTNAD 210
           ALRGLFIID+ G ++H ++N+L +GRSVDET+R ++A Q+  ++  EVCPAGW P     
Sbjct: 193 ALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKP--GEK 250

Query: 211 TIKPNPKDSKEYF 223
           ++KP+PK SKEYF
Sbjct: 251 SMKPDPKLSKEYF 263


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 54  NQLKLSD-FTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHL 112
           ++ KL D F   + VLF +P DFT VC TEL A +  A +F     +++G+S D   SH 
Sbjct: 20  DKFKLHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHK 79

Query: 113 AWINTPRNDGGLGKMEIPLLADYKKQISKDYDVL--LDDGFALRGLFIIDRNGTLRHMSV 170
            WI          K+  P++AD  K+I    +++  +++G   R L I+  +  ++   +
Sbjct: 80  DWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENG-PSRALHIVGPDSKIKLSFL 138

Query: 171 NDLPVGRSVDETLRLVKAFQFADKHGE--VCPAGWNPD 206
                GR++DE LR + +   A KH      P  W PD
Sbjct: 139 YPSTTGRNMDEVLRALDSLLMASKHNNKIATPVNWKPD 176


>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
           peroxiredoxin Q [Sedum lineare] GI:6899842; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 216

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 12/151 (7%)

Query: 40  APDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQ 99
           APDF+     NG+   + L  + GK VVL+FYP D T  C  +  AF D  + F     +
Sbjct: 75  APDFTLKDQ-NGK--PVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAE 131

Query: 100 VIGVSTDSEFSHLAWINTPRNDGGLGKMEIPLLADYKKQISKDYDVLLDDGFALRG--LF 157
           VIG+S D   SH A+ +         K+   LL+D   ++ KD+ V  D   AL G   +
Sbjct: 132 VIGISGDDSASHKAFASK-------YKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTY 184

Query: 158 IIDRNGTLRHMSVNDLPVGRSVDETLRLVKA 188
           ++D+NG ++ +  N     + +DETL+ +KA
Sbjct: 185 VLDKNGVVQLIYNNQFQPEKHIDETLKFLKA 215


>At3g08950.1 68416.m01045 electron transport SCO1/SenC family
           protein similar to SP|P23833 SCO1 protein, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02630: SCO1/SenC
          Length = 334

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 23  INFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 82
           IN ++ +    P   K A      +++  +  ++   +  GK+ +L+F       +CP E
Sbjct: 155 INKNSIAVKEGPSAGKAAIG-GPFSLIRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDE 213

Query: 83  LI---AFSDKAKDFAGIDCQVIGVSTDSE 108
           LI   A  DK K+ +G+D   + +S D E
Sbjct: 214 LIKLAAAIDKIKENSGVDVVPVFISVDPE 242


>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
           specific antioxidant (AhpC/TSA)/mal allergen family
           protein identical to SP|Q9M7T0 Putative peroxiredoxin,
           mitochondrial precursor {Arabidopsis thaliana}; similar
           to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 201

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 49  VNGEFNQLKLSD-FTGKYVVLFFYPLDFTFVCPTELI----AFSDKAKDFAGIDCQVIGV 103
           V+ +F+   LSD F GK VV+F  P  +T VC  + +    +  DK K   GID  VI V
Sbjct: 58  VSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFK-AKGID-SVICV 115

Query: 104 STDSEFSHLAW 114
           S +  F+   W
Sbjct: 116 SVNDPFAINGW 126


>At1g50830.1 68414.m05716 hypothetical protein
          Length = 768

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 19  VAKRINFSTTSTTRAPKV-----QKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPL 73
           + + I  ST S T+ P +     +K  P+  +     GE   + L D     V+L F  L
Sbjct: 102 IFEAIKVSTYSITKNPSLILSVSEKWCPETKSFVFPWGEAT-ITLEDVM---VLLGFSVL 157

Query: 74  DFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRNDGG 123
                 P E     D  K    +  Q +  STD   S  +W++T    GG
Sbjct: 158 GSPVFAPLETSETRDSVKKLENVRIQHMNSSTDRRVSQKSWVSTFLGRGG 207


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
          to cDNA putative transcription factor (HUA2)
          GI:4868119; contains Pfam profile  PF00855:  PWWP
          domain
          Length = 1392

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 64 KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQ 99
          KY V FF   +  FV P ++ AF+ +AK      CQ
Sbjct: 52 KYFVQFFGTEEIAFVAPPDIQAFTSEAKSKLLARCQ 87


>At5g02180.1 68418.m00139 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 1   MSFIVKQLSRSVLSPAFKVAKRINF--STTSTTRAPKVQKPAPDFSATAVVNGEFNQLKL 58
           +SF+ +  SR + S +F+  ++ +F  S +S++  P + +P PD   T +     +QLKL
Sbjct: 88  VSFMPQSSSRRLAS-SFQKKQQSSFCDSLSSSSSKPLLSQPVPDKEETILPVNPQSQLKL 146

Query: 59  S 59
           S
Sbjct: 147 S 147


>At1g58227.1 68414.m06616 hypothetical protein
          Length = 1323

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 68   LFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRNDGGLGKM 127
            +F +  +F   C   L      +     +D   + V    EF   AW+           M
Sbjct: 1100 IFVFIFEFLSGCKDGLARMKIISDILDLLDSNPMNVEALMEFGWSAWLTA--------SM 1151

Query: 128  EIPLLADYKKQISKDYDVLLDDGFALRGLFII 159
            ++ ++ DY+ ++    D+ L++   +RGLF +
Sbjct: 1152 KLDVIKDYRSELLNHDDLALNEQHFVRGLFCV 1183


>At5g66510.1 68418.m08386 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 258

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 104 STDSEFSHLAWINTPRNDGGLGKMEIPLLADYKKQISKDYDVLLDD 149
           S+  E+S+LA  +   N   L + E   L + K     +YD +LDD
Sbjct: 202 SSAVEYSNLAQAHATENAKNLDEAEFKKLLNKKNARDTEYDSVLDD 247


>At1g56630.1 68414.m06513 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 364

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 114 WINTPRNDGGLGKMEIPLLADYKKQISKDYDVLLD 148
           W+N P ++GG  K+ + L+ D+ +  S +  V+ D
Sbjct: 82  WLNLPSSNGGFFKIFLNLVKDFDQTRSTEVIVIRD 116


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,610,618
Number of Sequences: 28952
Number of extensions: 243608
Number of successful extensions: 476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 12
length of query: 227
length of database: 12,070,560
effective HSP length: 79
effective length of query: 148
effective length of database: 9,783,352
effective search space: 1447936096
effective search space used: 1447936096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)