GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000064-TA|BGIBMGA000064-PA|IPR000866|Alkyl hydroperoxide
reductase/ Thiol specific antioxidant/ Mal allergen,
IPR012336|Thioredoxin-like fold
         (227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   245   4e-66
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    29   0.43 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   0.98 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   3.0  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    26   5.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   5.2  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   6.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   9.2  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  245 bits (600), Expect = 4e-66
 Identities = 116/192 (60%), Positives = 149/192 (77%), Gaps = 5/192 (2%)

Query: 35  KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 94
           ++ KPAPDF  TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A  FA
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63

Query: 95  GIDCQVIGVSTDSEFSHLAWINTPRNDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 153
             + QVI  STDSE+SHLA+INTPR +GGLG + IPLLAD   ++S+DY VL++D G A 
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 154 RGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIK 213
           RGLF+ID  G LR +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W+    +DTI 
Sbjct: 124 RGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWH--KGSDTI- 180

Query: 214 PNPKDSKEYFQK 225
            + K+ ++YF K
Sbjct: 181 -DTKNPEKYFSK 191


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 56  LKLSDFTG-KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 114
           ++L D T  K +V+F YP   T  C  +   F D        D +V+G+S D+  +  A+
Sbjct: 65  IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 25  FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 82
           F+ +S+T     Q P P F   +  +G+F     +    K V L  YP   TF   TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 15 PAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGE 52
          P  KV K  ++ TT  + A  + K   D    A+VNGE
Sbjct: 54 PDGKVIKGTSWETTPISIAASISKGLADRVTVAIVNGE 91


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 18  KVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTF 77
           KV +R N    +T   P++        A ++++   N++  +DF GK+ +++F       
Sbjct: 79  KVLERQNDKVLATIGRPQLG------GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPD 132

Query: 78  VCPTEL 83
           +CP EL
Sbjct: 133 ICPDEL 138


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 203  WNPDTNADTIKPNPKDS 219
            WNP+   D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 14  SPAFKVAKRINFSTTSTTRAPKVQKPA 40
           +PA KV+ R +FS      AP V++PA
Sbjct: 160 NPAVKVSLRQSFSHLCHDEAPMVRRPA 186


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 29  STTRAPKVQKPAP 41
           STT  PKVQKP P
Sbjct: 362 STTTQPKVQKPVP 374


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,009
Number of Sequences: 5004
Number of extensions: 48237
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 2,362,478
effective HSP length: 70
effective length of query: 157
effective length of database: 2,012,198
effective search space: 315915086
effective search space used: 315915086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)