GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000064-TA|BGIBMGA000064-PA|IPR000866|Alkyl hydroperoxide
reductase/ Thiol specific antioxidant/ Mal allergen,
IPR012336|Thioredoxin-like fold
         (227 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   274   3e-74
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             145   3e-35
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   5e-29
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   7e-16
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                36   0.027
SB_45252| Best HMM Match : DIT1_PvcA (HMM E-Value=6.5e-07)             31   0.78 
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   3.2  
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          28   5.5  
SB_17508| Best HMM Match : Herpes_gE (HMM E-Value=8.5)                 28   7.3  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)                    27   9.6  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  274 bits (673), Expect = 3e-74
 Identities = 134/210 (63%), Positives = 160/210 (76%), Gaps = 5/210 (2%)

Query: 4   IVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAV-VNGEFNQLKLSDFT 62
           +V Q  R+  +PAF +AKR+   + +      +QKPAP FS TAV  +GEF  LKLSD+ 
Sbjct: 22  LVLQQPRNA-APAFHLAKRMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYK 80

Query: 63  GKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRNDG 122
           GKYVVLFFYPLDFTFVCPTE+IAFSD+  +F  I+C+VI  S DSE+SHLAW N PR  G
Sbjct: 81  GKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKG 140

Query: 123 GLGKMEIPLLADYKKQISKDYDVLLDD-GFALRGLFIIDRNGTLRHMSVNDLPVGRSVDE 181
           G+G + IP+L+D  KQISKDY VLL+D G ALRGLFIID  G LR +++NDLPVGRSVDE
Sbjct: 141 GIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDE 200

Query: 182 TLRLVKAFQFADKHGEVCPAGWNPDTNADT 211
           TLRL++AFQF DKHGEVCPAGW P   ADT
Sbjct: 201 TLRLIQAFQFTDKHGEVCPAGWRP--GADT 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  145 bits (351), Expect = 3e-35
 Identities = 66/97 (68%), Positives = 77/97 (79%), Gaps = 1/97 (1%)

Query: 116 NTPRNDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFALRGLFIIDRNGTLRHMSVNDLP 174
           N PR  GG+G + IP+L+D  KQISKDY VLL+D G ALRGLFIID  G LR +++NDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 175 VGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADT 211
           VGRSVDETLRL++AFQF DKHGEVCPAGW P  +  T
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADTGT 99


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  124 bits (300), Expect = 5e-29
 Identities = 53/80 (66%), Positives = 66/80 (82%)

Query: 35  KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 94
           ++ KPAP +  TAVVNGEF +LKLSDF GKY+V FFYPLDFTFVCPTE+IAFSD+ ++F 
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 95  GIDCQVIGVSTDSEFSHLAW 114
            I+ +V+G S DS F+HLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/41 (75%), Positives = 36/41 (87%)

Query: 155 GLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH 195
           GLFIID  G LR +++NDLPVGRSVDETLRLV+AFQ+ DKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 36/51 (70%), Positives = 41/51 (80%), Gaps = 2/51 (3%)

Query: 175 VGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSKEYFQK 225
           VGRSVDETLRLV+AFQ+ DKHGEVCPAGW P    DTI P+P   K+YF+K
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKP--GKDTIIPDPTQKKKYFEK 49


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 102 GVSTDSEFSHLAWI------NTPRNDGGLGKMEIPLLADYKKQISKDYDVLLDD-----G 150
           G+S D   SH  W+      N  +N     K   P++AD +++++    ++  D     G
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSS-AKFNYPIIADERRELAVKLGMVDPDEKDSKG 61

Query: 151 FAL--RGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGW 203
             L  R +FII  +  L+   +     GR+ DE LR++ + Q         P  W
Sbjct: 62  LPLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDW 116


>SB_45252| Best HMM Match : DIT1_PvcA (HMM E-Value=6.5e-07)
          Length = 211

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 7  QLSRSVLSPAFKVAKRIN-FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGK 64
          QL++SVLS   +  + I       TT  PK  +P  +  ATA++  +  +  L  F GK
Sbjct: 17 QLAQSVLSKVMQFRRMIEECQDNCTTECPKCHRPHENKVATAIMQNKKIRFVLPGFPGK 75


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 140  SKDYDVLLDDGFALRGLFIIDRNGTLRHMSVNDLPVGR 177
            + D D++   G    GL I D N  L+ +S+ND   GR
Sbjct: 2663 ANDEDIICTGGDNNPGLVITDLNSELKDISINDTIAGR 2700


>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 61  FTGKYVVLFFYPLDFTFVC-PTELIAFSDKAKDF--AGIDCQVIGVSTDSEFSHLAW 114
           F GK VVLF  P  FT  C  T L  +++ A  F   G+D  +I +S +  F   +W
Sbjct: 32  FAGKTVVLFALPGAFTPTCSSTHLPRYNELAPVFKAQGVD-DIICLSVNDTFVMNSW 87


>SB_17508| Best HMM Match : Herpes_gE (HMM E-Value=8.5)
          Length = 394

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 136 KKQISKDYDVLLDDGFALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH 195
           K++   DYD  +  G +   L   D +  +  M+V +LP   S    L+ V   +  +++
Sbjct: 82  KEEARGDYDDAISSGHSAFLLEESDESSDIFQMNVGNLPPNESATLQLKFVTELEVDEEN 141

Query: 196 GEV 198
           G V
Sbjct: 142 GTV 144


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)

Query: 199 CPAG-WNPDTNADTIKP 214
           CPAG +NPDTNA T  P
Sbjct: 435 CPAGTYNPDTNATTQTP 451


>SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 7   QLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYV 66
           ++++S  +  +  A   N ++TST++  KV     D +    V  E NQ  +  FT  + 
Sbjct: 62  EINQSAQNVGYSTASLYNPNSTSTSKERKVLTNLQDRNQYDFVEAECNQRAVHWFTSYFP 121

Query: 67  VLFF 70
           ++ F
Sbjct: 122 LIVF 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,775,196
Number of Sequences: 59808
Number of extensions: 326307
Number of successful extensions: 638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 12
length of query: 227
length of database: 16,821,457
effective HSP length: 80
effective length of query: 147
effective length of database: 12,036,817
effective search space: 1769412099
effective search space used: 1769412099
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)