GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000064-TA|BGIBMGA000064-PA|IPR000866|Alkyl hydroperoxide
reductase/ Thiol specific antioxidant/ Mal allergen,
IPR012336|Thioredoxin-like fold
         (227 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   273   8e-74
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   252   1e-67
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    56   2e-08
Z70035-4|CAA93864.2|  410|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF067618-1|AAC19199.1| 1101|Caenorhabditis elegans Hypothetical ...    28   4.8  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  273 bits (669), Expect = 8e-74
 Identities = 128/191 (67%), Positives = 152/191 (79%), Gaps = 3/191 (1%)

Query: 36  VQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAG 95
           + KPAP F   AVV+GEF  + LSD+ GKYVVLFFYPLDFTFVCPTE+IAFSD+A++F  
Sbjct: 6   IGKPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKA 65

Query: 96  IDCQVIGVSTDSEFSHLAWINTPRNDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALR 154
           I+  V+  STDS FSHLAWIN PR  GGLG+M IP+LAD   QIS+DY VL  D+G A R
Sbjct: 66  INTVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFR 125

Query: 155 GLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKP 214
           GLFIID +  LR +++NDLPVGRSVDETLRLV+AFQF +KHGEVCPAGW P   +DTIKP
Sbjct: 126 GLFIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTP--GSDTIKP 183

Query: 215 NPKDSKEYFQK 225
             K+S+EYF+K
Sbjct: 184 GVKESQEYFKK 194


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  252 bits (618), Expect = 1e-67
 Identities = 122/227 (53%), Positives = 158/227 (69%), Gaps = 5/227 (2%)

Query: 2   SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDF 61
           S  V+ L R+V + A +         +     PK   PA  F  TAVV+G+F  +   D+
Sbjct: 3   SSAVRALCRTVPTVATRQLSTSRALLSLRPLGPKNTVPA--FKGTAVVDGDFKVISDQDY 60

Query: 62  TGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRND 121
            GK++V+FFYPLDFTFVCPTE+IA+ D+A +F  +  +V+  S DS FSHLAW+NTPR D
Sbjct: 61  KGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKD 120

Query: 122 GGLGKMEIPLLADYKKQISKDYDVL-LDDGFALRGLFIIDRNGTLRHMSVNDLPVGRSVD 180
           GGLG M+IPLLAD+ K+I+  + VL  + G + RGLF+ID +GT+RH + NDLPVGRSVD
Sbjct: 121 GGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCNDLPVGRSVD 180

Query: 181 ETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSKEYFQKAN 227
           ETLR++KAFQF+DKHGEVCPA W+ D  + TIKP    SKEYF K N
Sbjct: 181 ETLRVLKAFQFSDKHGEVCPADWHED--SPTIKPGVATSKEYFNKVN 225


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 58  LSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW-- 114
           L ++ G+ +++LF +P DFT VC TEL      A +F     Q++ +S DS  +H  W  
Sbjct: 22  LHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAK 81

Query: 115 -INTPRNDGGLGK-MEIPLLADYKKQISK-----DYDVLLDDGFAL--RGLFIIDRNGTL 165
            IN+       G  +   ++AD  + I       D D +  +G  L  R + +   +  L
Sbjct: 82  DINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGPDKKL 141

Query: 166 RHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGW 203
           +   +     GR+  E LR+V   Q   K     PA W
Sbjct: 142 KSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANW 179


>Z70035-4|CAA93864.2|  410|Caenorhabditis elegans Hypothetical
           protein R09D1.4 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 6   KQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFT 62
           K+L+ + ++PA         S TSTT++PK+    P F    +V G F   + ++ T
Sbjct: 56  KKLTTTTINPATSATTGNTSSATSTTKSPKIATKTP-FCKKRIV-GFFTDTQSTEIT 110


>U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical
           protein F54C1.1 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 101 IGVSTDSEFSHLAWINTPRNDGGLGKMEIP 130
           +G   D   +++ WI T   D G G+M+IP
Sbjct: 37  VGEQLDENGNNITWIQTYLYDFGFGEMQIP 66


>AF067618-1|AAC19199.1| 1101|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1101

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 10  RSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLF 69
           R++L   +K+ K  N    S T      KP   F+   + +   NQL+   F   + ++ 
Sbjct: 561 RTLLKYVYKLQKAHNTFFESVTSYSGTSKPMFTFNDLVINSKISNQLEFLQFKNTHFLI- 619

Query: 70  FYPLDFTFVCPTELIAFSDKAKDFAGID 97
              L  +    TELIA S+  K    +D
Sbjct: 620 -QNLGLSVHALTELIAISNDRKRILEVD 646


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 83  LIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRNDGGLGKMEI-PLLAD-YKKQIS 140
           +  + D    F  +     G S  S+   +A+  T  N  GL  + I  L  D Y     
Sbjct: 391 IYVYYDNVDKFYFVSLYTFGRSVTSKVIGIAF-ETEENSCGLNLVPIRELYKDRYYVVAG 449

Query: 141 KDYDVLLDDGFALRG 155
            DY  L+DDG+ + G
Sbjct: 450 NDYQYLIDDGYNITG 464


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,952,775
Number of Sequences: 27539
Number of extensions: 263380
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 7
length of query: 227
length of database: 12,573,161
effective HSP length: 79
effective length of query: 148
effective length of database: 10,397,580
effective search space: 1538841840
effective search space used: 1538841840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)