GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000064-TA|BGIBMGA000064-PA|IPR000866|Alkyl hydroperoxide
reductase/ Thiol specific antioxidant/ Mal allergen,
IPR012336|Thioredoxin-like fold
         (227 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 77  FVCPTELIAFS-DKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRNDGGLGKMEIPLLADY 135
           F+C  E   F+     DF   DC++   +    ++   W     +  GLG  EIP     
Sbjct: 735 FLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGVEEIP----- 789

Query: 136 KKQISKDYDVLLDDGFALRGL 156
            ++I  D   +  DG  LR L
Sbjct: 790 -RRIPMDATEVYLDGNVLREL 809



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 70  FYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGV 103
           F   D    CP     ++D+  +   +DC  +GV
Sbjct: 752 FDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGV 785


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 16  AFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNG 51
           A+ V      ++T+TT   K+QK   DF  + V NG
Sbjct: 468 AYMVVDTPFLASTTTTNDIKMQKVLIDFWVSFVNNG 503


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 16  AFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNG 51
           A+ V      ++T+TT   K+QK   DF  + V NG
Sbjct: 468 AYMVVDTPFLASTTTTNDIKMQKVLIDFWVSFVNNG 503


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 158 IIDRNGTLRHMSVNDLPVG 176
           ++DRNG L    ++DL +G
Sbjct: 313 VMDRNGVLFFGLLSDLAIG 331


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 110 SHLAWINTPRNDGGLGK 126
           SHL   +T  NDGGL K
Sbjct: 454 SHLNISSTHTNDGGLYK 470


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,565
Number of Sequences: 429
Number of extensions: 2904
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 227
length of database: 140,377
effective HSP length: 56
effective length of query: 171
effective length of database: 116,353
effective search space: 19896363
effective search space used: 19896363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)